Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26592 | 3' | -54.8 | NC_005357.1 | + | 19076 | 0.81 | 0.079609 |
Target: 5'- cCGUGUucaUCGGCGGCGAggccgucgaaUUGCGCGGCu -3' miRNA: 3'- aGCACA---AGCCGUCGUUa---------GACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 40283 | 0.66 | 0.651807 |
Target: 5'- aCGUGUaCGGCGGCGcggUUGaC-CGGCu -3' miRNA: 3'- aGCACAaGCCGUCGUua-GAC-GcGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 27212 | 0.66 | 0.66305 |
Target: 5'- aUCGUGUcgaugUCGGCGGaAAUC-GCcauCGGCg -3' miRNA: 3'- -AGCACA-----AGCCGUCgUUAGaCGc--GCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 14659 | 0.66 | 0.68432 |
Target: 5'- uUCGUGUacgugUCcgagccggacgagGGCAGCGAgUUGCGCgagGGCc -3' miRNA: 3'- -AGCACA-----AG-------------CCGUCGUUaGACGCG---CCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 7535 | 0.71 | 0.352015 |
Target: 5'- cCGUGcgcUCGGCGGCGugcUCgaucCGCGGCg -3' miRNA: 3'- aGCACa--AGCCGUCGUu--AGac--GCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 41616 | 0.68 | 0.507565 |
Target: 5'- ---cGUUCGGCaagGGCugg--GCGCGGCg -3' miRNA: 3'- agcaCAAGCCG---UCGuuagaCGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 34429 | 0.68 | 0.540028 |
Target: 5'- uUCGUgcGUUCGGCAaaCGA---GCGCGGCg -3' miRNA: 3'- -AGCA--CAAGCCGUc-GUUagaCGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 5334 | 0.68 | 0.562056 |
Target: 5'- aCGUGgc--GCAGCAuggcaucgcgCUGCGUGGCc -3' miRNA: 3'- aGCACaagcCGUCGUua--------GACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 26661 | 0.67 | 0.584321 |
Target: 5'- gUCGUGcgucgcaccaUUGGCGGCAA-CgagGUGCGGUa -3' miRNA: 3'- -AGCACa---------AGCCGUCGUUaGa--CGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 42067 | 0.66 | 0.629274 |
Target: 5'- uUCGUGUUCucgggccuGGCGGaCGGccugCUGCGCGacGCc -3' miRNA: 3'- -AGCACAAG--------CCGUC-GUUa---GACGCGC--CG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 26605 | 0.67 | 0.59552 |
Target: 5'- gCGUGUUCG--AGUc--CUGCGCGGUg -3' miRNA: 3'- aGCACAAGCcgUCGuuaGACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 10076 | 0.67 | 0.584321 |
Target: 5'- cUCGgcggCGaccGCAGCGAcCUGgGCGGCg -3' miRNA: 3'- -AGCacaaGC---CGUCGUUaGACgCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 38543 | 0.78 | 0.137983 |
Target: 5'- ---aGUUCGGCGGCGAcggCaGCGCGGCc -3' miRNA: 3'- agcaCAAGCCGUCGUUa--GaCGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 14627 | 0.67 | 0.59552 |
Target: 5'- gCGaGgaCGuGCuGCGG-CUGCGCGGCg -3' miRNA: 3'- aGCaCaaGC-CGuCGUUaGACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 31208 | 0.77 | 0.150217 |
Target: 5'- gCGUGggCGGgaacgUGGCGGUCaUGCGCGGCa -3' miRNA: 3'- aGCACaaGCC-----GUCGUUAG-ACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 12403 | 0.68 | 0.562056 |
Target: 5'- -gGUGUggGGCAcCAAgg-GCGCGGCc -3' miRNA: 3'- agCACAagCCGUcGUUagaCGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 8202 | 0.66 | 0.629274 |
Target: 5'- uUCGUcagcgacaUGGCGGcCAGUUcgUGCGCGGCc -3' miRNA: 3'- -AGCAcaa-----GCCGUC-GUUAG--ACGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 24625 | 0.66 | 0.66305 |
Target: 5'- cCGUGca-GGCGG-AAUaCUGCGCGcGCu -3' miRNA: 3'- aGCACaagCCGUCgUUA-GACGCGC-CG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 12298 | 0.72 | 0.310826 |
Target: 5'- -gGUGcaggcCGGCGGCGuguUCUgGCGCGGCc -3' miRNA: 3'- agCACaa---GCCGUCGUu--AGA-CGCGCCG- -5' |
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26592 | 3' | -54.8 | NC_005357.1 | + | 14719 | 0.68 | 0.518299 |
Target: 5'- --aUGacCGGCGGCGAgccgCUGC-CGGCg -3' miRNA: 3'- agcACaaGCCGUCGUUa---GACGcGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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