miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26594 3' -60.5 NC_005357.1 + 34008 1.12 0.000168
Target:  5'- uCCGCGACGCCCCCGCGAACUGCUCGCu -3'
miRNA:   3'- -GGCGCUGCGGGGGCGCUUGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 20552 0.87 0.013721
Target:  5'- aUGCGGCGCCCCCGCuuGCUGCUCa- -3'
miRNA:   3'- gGCGCUGCGGGGGCGcuUGACGAGcg -5'
26594 3' -60.5 NC_005357.1 + 6397 0.82 0.030553
Target:  5'- gCCGCGGCGCCCUCGgugaugucguCGAACUcguccucGCUCGCg -3'
miRNA:   3'- -GGCGCUGCGGGGGC----------GCUUGA-------CGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 35983 0.78 0.064003
Target:  5'- aCgGCGACGCCUUCGCGGGCgGUggugUCGCg -3'
miRNA:   3'- -GgCGCUGCGGGGGCGCUUGaCG----AGCG- -5'
26594 3' -60.5 NC_005357.1 + 30296 0.75 0.105486
Target:  5'- gUCGgGuaGCGCCCCUGCGAGCcGCuUUGCg -3'
miRNA:   3'- -GGCgC--UGCGGGGGCGCUUGaCG-AGCG- -5'
26594 3' -60.5 NC_005357.1 + 41966 0.74 0.117667
Target:  5'- aCCGCGACaGCgCCCGCaAGCUGgC-CGCg -3'
miRNA:   3'- -GGCGCUG-CGgGGGCGcUUGAC-GaGCG- -5'
26594 3' -60.5 NC_005357.1 + 5031 0.74 0.131148
Target:  5'- gCCGCGAUGCCCCgcucgaugGCGucCUGCUUGa -3'
miRNA:   3'- -GGCGCUGCGGGGg-------CGCuuGACGAGCg -5'
26594 3' -60.5 NC_005357.1 + 9737 0.73 0.134735
Target:  5'- aCGCGGCGagcaCgUCgGCGAACUGCUCGg -3'
miRNA:   3'- gGCGCUGCg---G-GGgCGCUUGACGAGCg -5'
26594 3' -60.5 NC_005357.1 + 37095 0.73 0.134735
Target:  5'- gCGCGAUGCCaugCUGCGccACgUGCUCGCg -3'
miRNA:   3'- gGCGCUGCGGg--GGCGCu-UG-ACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 27801 0.73 0.134735
Target:  5'- gCCGCGcagccgcagcACGUCCUCGCGcgcGCUGCcCGCg -3'
miRNA:   3'- -GGCGC----------UGCGGGGGCGCu--UGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 31282 0.73 0.138412
Target:  5'- gCGCaGGCGgCCCagcaGCaggccGAACUGCUCGCa -3'
miRNA:   3'- gGCG-CUGCgGGGg---CG-----CUUGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 38227 0.73 0.14218
Target:  5'- gCCGCGACGUgCUCGCGGccaACaUGCcCGCc -3'
miRNA:   3'- -GGCGCUGCGgGGGCGCU---UG-ACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 18903 0.73 0.143714
Target:  5'- aCCGCGugcgccgccuggaagGCGCgCUCGCgGAACUGC-CGCa -3'
miRNA:   3'- -GGCGC---------------UGCGgGGGCG-CUUGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 18663 0.73 0.146042
Target:  5'- gCCGCGGCGCaucggCCCgGUGGcgccggcauggcGCUGCUgCGCg -3'
miRNA:   3'- -GGCGCUGCG-----GGGgCGCU------------UGACGA-GCG- -5'
26594 3' -60.5 NC_005357.1 + 18104 0.72 0.158209
Target:  5'- aUCGCucugcCGCCugaCCCGCG-GCUGCUCGCc -3'
miRNA:   3'- -GGCGcu---GCGG---GGGCGCuUGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 25146 0.72 0.174012
Target:  5'- cCCGCGGCGCCggcUUCGUGGACggcaauauccccgGCUUGCc -3'
miRNA:   3'- -GGCGCUGCGG---GGGCGCUUGa------------CGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 14597 0.72 0.175852
Target:  5'- gCGCGgccgGCGCCaCCGCGGGCaGCgcgCGCg -3'
miRNA:   3'- gGCGC----UGCGGgGGCGCUUGaCGa--GCG- -5'
26594 3' -60.5 NC_005357.1 + 3462 0.71 0.200352
Target:  5'- gCCGCG-CGCCCCgaagaaCGCGAACgagaacgacgGCcCGCu -3'
miRNA:   3'- -GGCGCuGCGGGG------GCGCUUGa---------CGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 35901 0.71 0.204538
Target:  5'- -gGCGACGacgaCCCCGaaaaacucgccaGaAACUGCUCGCc -3'
miRNA:   3'- ggCGCUGCg---GGGGCg-----------C-UUGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 21151 0.71 0.205596
Target:  5'- gCCGUGuccGCGCCCUgguucaacagCGCGGcCUGCUgCGCg -3'
miRNA:   3'- -GGCGC---UGCGGGG----------GCGCUuGACGA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.