miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26594 3' -60.5 NC_005357.1 + 27838 0.68 0.29924
Target:  5'- nCgGUGGCGCCggCCGCGccGCUGCUCa- -3'
miRNA:   3'- -GgCGCUGCGGg-GGCGCu-UGACGAGcg -5'
26594 3' -60.5 NC_005357.1 + 17709 0.7 0.239596
Target:  5'- gCCGgGAaaUGCCCaUCGCGGcaaGCUGCgCGCa -3'
miRNA:   3'- -GGCgCU--GCGGG-GGCGCU---UGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 9535 0.69 0.251932
Target:  5'- gCUGCGGCccuguucgGCCagUGCGAuCUGCUCGCc -3'
miRNA:   3'- -GGCGCUG--------CGGggGCGCUuGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 32130 0.69 0.257652
Target:  5'- aCCuCGACGCCCCCGaaucccucaaggcCGAACUcgacCUUGCc -3'
miRNA:   3'- -GGcGCUGCGGGGGC-------------GCUUGAc---GAGCG- -5'
26594 3' -60.5 NC_005357.1 + 35865 0.69 0.258294
Target:  5'- -gGCGGauggcaaGCCCUaCGCGGGCUGCUaCGUc -3'
miRNA:   3'- ggCGCUg------CGGGG-GCGCUUGACGA-GCG- -5'
26594 3' -60.5 NC_005357.1 + 23431 0.69 0.264786
Target:  5'- gUGCGACGCCggCCgggaUGCGGAUgGUUCGCg -3'
miRNA:   3'- gGCGCUGCGG--GG----GCGCUUGaCGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 37414 0.69 0.270742
Target:  5'- aUCGCGGCGCUgaaaGCGGACUGCgccgaccugcuguUCGCc -3'
miRNA:   3'- -GGCGCUGCGGggg-CGCUUGACG-------------AGCG- -5'
26594 3' -60.5 NC_005357.1 + 14323 0.69 0.284362
Target:  5'- gCGCG-CGCCUUgGCuGAACUGCcgggccugcugguUCGCg -3'
miRNA:   3'- gGCGCuGCGGGGgCG-CUUGACG-------------AGCG- -5'
26594 3' -60.5 NC_005357.1 + 9725 0.69 0.285057
Target:  5'- gCCuCGAaGCCgCgGgCGAACUGCUCGUg -3'
miRNA:   3'- -GGcGCUgCGGgGgC-GCUUGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 35410 0.7 0.23362
Target:  5'- -gGCGgcacaaACGCCCaucaCGCGAGCcgacccGCUCGCg -3'
miRNA:   3'- ggCGC------UGCGGGg---GCGCUUGa-----CGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 14942 0.7 0.222043
Target:  5'- aCUGCG-CGCCCaacuCgGCGA--UGCUCGCg -3'
miRNA:   3'- -GGCGCuGCGGG----GgCGCUugACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 12134 0.7 0.222043
Target:  5'- gCGCGACGCgCCaCGC--GCUGCgcuucCGCg -3'
miRNA:   3'- gGCGCUGCGgGG-GCGcuUGACGa----GCG- -5'
26594 3' -60.5 NC_005357.1 + 20552 0.87 0.013721
Target:  5'- aUGCGGCGCCCCCGCuuGCUGCUCa- -3'
miRNA:   3'- gGCGCUGCGGGGGCGcuUGACGAGcg -5'
26594 3' -60.5 NC_005357.1 + 35983 0.78 0.064003
Target:  5'- aCgGCGACGCCUUCGCGGGCgGUggugUCGCg -3'
miRNA:   3'- -GgCGCUGCGGGGGCGCUUGaCG----AGCG- -5'
26594 3' -60.5 NC_005357.1 + 30296 0.75 0.105486
Target:  5'- gUCGgGuaGCGCCCCUGCGAGCcGCuUUGCg -3'
miRNA:   3'- -GGCgC--UGCGGGGGCGCUUGaCG-AGCG- -5'
26594 3' -60.5 NC_005357.1 + 27801 0.73 0.134735
Target:  5'- gCCGCGcagccgcagcACGUCCUCGCGcgcGCUGCcCGCg -3'
miRNA:   3'- -GGCGC----------UGCGGGGGCGCu--UGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 37095 0.73 0.134735
Target:  5'- gCGCGAUGCCaugCUGCGccACgUGCUCGCg -3'
miRNA:   3'- gGCGCUGCGGg--GGCGCu-UG-ACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 38227 0.73 0.14218
Target:  5'- gCCGCGACGUgCUCGCGGccaACaUGCcCGCc -3'
miRNA:   3'- -GGCGCUGCGgGGGCGCU---UG-ACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 3462 0.71 0.200352
Target:  5'- gCCGCG-CGCCCCgaagaaCGCGAACgagaacgacgGCcCGCu -3'
miRNA:   3'- -GGCGCuGCGGGG------GCGCUUGa---------CGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 21151 0.71 0.205596
Target:  5'- gCCGUGuccGCGCCCUgguucaacagCGCGGcCUGCUgCGCg -3'
miRNA:   3'- -GGCGC---UGCGGGG----------GCGCUuGACGA-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.