miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26594 3' -60.5 NC_005357.1 + 1657 0.66 0.422685
Target:  5'- uCUGCG-CGUCCUguuugCGCGugauGCUGC-CGCg -3'
miRNA:   3'- -GGCGCuGCGGGG-----GCGCu---UGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 2205 0.66 0.413549
Target:  5'- aUGcCGACGCCCUCGuCGggUaGCaccacgCGCa -3'
miRNA:   3'- gGC-GCUGCGGGGGC-GCuuGaCGa-----GCG- -5'
26594 3' -60.5 NC_005357.1 + 2905 0.66 0.431942
Target:  5'- aCGCcGCGCgCCCCGa----UGUUCGCg -3'
miRNA:   3'- gGCGcUGCG-GGGGCgcuugACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 3182 0.68 0.306534
Target:  5'- gCC-CGGCGUCCgCUGCGuACaGCUUGCu -3'
miRNA:   3'- -GGcGCUGCGGG-GGCGCuUGaCGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 3462 0.71 0.200352
Target:  5'- gCCGCG-CGCCCCgaagaaCGCGAACgagaacgacgGCcCGCu -3'
miRNA:   3'- -GGCGCuGCGGGG------GCGCUUGa---------CGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 3718 0.71 0.210958
Target:  5'- aUGCGGCGCaUCCGCuca-UGCUCGCg -3'
miRNA:   3'- gGCGCUGCGgGGGCGcuugACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 4207 0.66 0.413549
Target:  5'- gCCGCGA-GCaCgUCGCGGcuuGCgGCUUGCg -3'
miRNA:   3'- -GGCGCUgCG-GgGGCGCU---UGaCGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 4740 0.67 0.368904
Target:  5'- aCCGCGAUGUUCucggccacggCCGCGAugUucucggcGUUCGCc -3'
miRNA:   3'- -GGCGCUGCGGG----------GGCGCUugA-------CGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 4931 0.67 0.37825
Target:  5'- -aGCGAUGCCCgCGaCGGuCUGCaCGUc -3'
miRNA:   3'- ggCGCUGCGGGgGC-GCUuGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 5031 0.74 0.131148
Target:  5'- gCCGCGAUGCCCCgcucgaugGCGucCUGCUUGa -3'
miRNA:   3'- -GGCGCUGCGGGGg-------CGCuuGACGAGCg -5'
26594 3' -60.5 NC_005357.1 + 6397 0.82 0.030553
Target:  5'- gCCGCGGCGCCCUCGgugaugucguCGAACUcguccucGCUCGCg -3'
miRNA:   3'- -GGCGCUGCGGGGGC----------GCUUGA-------CGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 6451 0.69 0.258294
Target:  5'- cCCGCGAaggcguCGCCgUCGCGcaggAACUGCaCGCc -3'
miRNA:   3'- -GGCGCU------GCGGgGGCGC----UUGACGaGCG- -5'
26594 3' -60.5 NC_005357.1 + 6748 0.69 0.27141
Target:  5'- gCCuuGGCGCCCCacuuuuccuugGCGAcCUGCUCGa -3'
miRNA:   3'- -GGcgCUGCGGGGg----------CGCUuGACGAGCg -5'
26594 3' -60.5 NC_005357.1 + 7896 0.66 0.421766
Target:  5'- -gGCGGCGCgUgcguagaUCGCcAGCUGCUCGUu -3'
miRNA:   3'- ggCGCUGCGgG-------GGCGcUUGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 8160 0.66 0.419016
Target:  5'- gCGCuGCGUCCCUGCGcgugcgcccggauGCUGCcggcgauuucaUCGCg -3'
miRNA:   3'- gGCGcUGCGGGGGCGCu------------UGACG-----------AGCG- -5'
26594 3' -60.5 NC_005357.1 + 9535 0.69 0.251932
Target:  5'- gCUGCGGCccuguucgGCCagUGCGAuCUGCUCGCc -3'
miRNA:   3'- -GGCGCUG--------CGGggGCGCUuGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 9725 0.69 0.285057
Target:  5'- gCCuCGAaGCCgCgGgCGAACUGCUCGUg -3'
miRNA:   3'- -GGcGCUgCGGgGgC-GCUUGACGAGCG- -5'
26594 3' -60.5 NC_005357.1 + 9737 0.73 0.134735
Target:  5'- aCGCGGCGagcaCgUCgGCGAACUGCUCGg -3'
miRNA:   3'- gGCGCUGCg---G-GGgCGCUUGACGAGCg -5'
26594 3' -60.5 NC_005357.1 + 9814 0.67 0.369747
Target:  5'- aCCGCGGCgucgcgGCCCUugaCGCGGGCcaGCUUGg -3'
miRNA:   3'- -GGCGCUG------CGGGG---GCGCUUGa-CGAGCg -5'
26594 3' -60.5 NC_005357.1 + 9866 0.66 0.431942
Target:  5'- -aGCGugGCaCCgGCGcGCUGCUucucggccaggCGCg -3'
miRNA:   3'- ggCGCugCGgGGgCGCuUGACGA-----------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.