miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26595 3' -63.1 NC_005357.1 + 38041 0.66 0.293479
Target:  5'- aGgCCCGGC-GCGacGGCgCCUGGcuGCg -3'
miRNA:   3'- -CgGGGCCGuCGCa-CCG-GGACCuuCGg -5'
26595 3' -63.1 NC_005357.1 + 14207 0.66 0.286433
Target:  5'- -aCCCGcGCguggucgucGGCGUGGCcgaCCUGGAcaaggcGCCg -3'
miRNA:   3'- cgGGGC-CG---------UCGCACCG---GGACCUu-----CGG- -5'
26595 3' -63.1 NC_005357.1 + 37803 0.66 0.286433
Target:  5'- aCCCugCGGCAGCGcgGGCCaacauUGGccuGGCUg -3'
miRNA:   3'- cGGG--GCCGUCGCa-CCGGg----ACCu--UCGG- -5'
26595 3' -63.1 NC_005357.1 + 13157 0.66 0.279522
Target:  5'- cGCCUcgauguCGGcCAGUGUcGGCCgcgCUGGgcGCCc -3'
miRNA:   3'- -CGGG------GCC-GUCGCA-CCGG---GACCuuCGG- -5'
26595 3' -63.1 NC_005357.1 + 42111 0.66 0.266097
Target:  5'- cCCCCGGUacGGCac-GCCCUGGAcggaagAGCg -3'
miRNA:   3'- cGGGGCCG--UCGcacCGGGACCU------UCGg -5'
26595 3' -63.1 NC_005357.1 + 7627 0.66 0.266097
Target:  5'- aGCgCCGGaCA-CGUGGCCUUGGccuuGCa -3'
miRNA:   3'- -CGgGGCC-GUcGCACCGGGACCuu--CGg -5'
26595 3' -63.1 NC_005357.1 + 10073 0.66 0.259583
Target:  5'- gGCCUCGGCGGCGaccGCagcgaCCUGGGcGGCg -3'
miRNA:   3'- -CGGGGCCGUCGCac-CG-----GGACCU-UCGg -5'
26595 3' -63.1 NC_005357.1 + 27706 0.67 0.255737
Target:  5'- cGCgCCGGCAGCGgcucgccgccggucaUGGaCUUGauGAGGCCc -3'
miRNA:   3'- -CGgGGCCGUCGC---------------ACCgGGAC--CUUCGG- -5'
26595 3' -63.1 NC_005357.1 + 14815 0.67 0.252568
Target:  5'- aCCUCGGCGGCGcUGccuucGCCCaggucgaugccguUGGcGGCCa -3'
miRNA:   3'- cGGGGCCGUCGC-AC-----CGGG-------------ACCuUCGG- -5'
26595 3' -63.1 NC_005357.1 + 28777 0.67 0.246945
Target:  5'- cGCgCaCGGCGucGCGcuuGCCCUGGuuGCCg -3'
miRNA:   3'- -CGgG-GCCGU--CGCac-CGGGACCuuCGG- -5'
26595 3' -63.1 NC_005357.1 + 25538 0.67 0.246945
Target:  5'- cGCCgCCGGCAGCGcc-CCCgu--AGCCg -3'
miRNA:   3'- -CGG-GGCCGUCGCaccGGGaccuUCGG- -5'
26595 3' -63.1 NC_005357.1 + 6339 0.67 0.24082
Target:  5'- cGCCCCaGCcaaAGCGcccGGCCCga-AGGCCg -3'
miRNA:   3'- -CGGGGcCG---UCGCa--CCGGGaccUUCGG- -5'
26595 3' -63.1 NC_005357.1 + 22744 0.67 0.24082
Target:  5'- uGCCCCaGCAGaGUGgacuuGCCCaGGGugagGGCCg -3'
miRNA:   3'- -CGGGGcCGUCgCAC-----CGGGaCCU----UCGG- -5'
26595 3' -63.1 NC_005357.1 + 11514 0.67 0.234822
Target:  5'- aGCgCCUGcGCuGGCGUgaGGCCCUGcGAGCg -3'
miRNA:   3'- -CG-GGGC-CG-UCGCA--CCGGGACcUUCGg -5'
26595 3' -63.1 NC_005357.1 + 4044 0.67 0.234822
Target:  5'- gGCCgCGGCgAGCGgcaggccagcGGCCCaggggggauUGGuAGCCa -3'
miRNA:   3'- -CGGgGCCG-UCGCa---------CCGGG---------ACCuUCGG- -5'
26595 3' -63.1 NC_005357.1 + 8861 0.67 0.234822
Target:  5'- aGCCCaggacggugCGGUAGCGUucGGCCUUGGc-GUCc -3'
miRNA:   3'- -CGGG---------GCCGUCGCA--CCGGGACCuuCGG- -5'
26595 3' -63.1 NC_005357.1 + 35255 0.67 0.223202
Target:  5'- cGCCCCcGaauccgacaAGCGcccGGCCCUGGucauccAGGCCg -3'
miRNA:   3'- -CGGGGcCg--------UCGCa--CCGGGACC------UUCGG- -5'
26595 3' -63.1 NC_005357.1 + 20502 0.67 0.219812
Target:  5'- gGCCuuGGuCGGCgGUGacaucuacggcaacaGCCCcgcaaUGGAAGCCu -3'
miRNA:   3'- -CGGggCC-GUCG-CAC---------------CGGG-----ACCUUCGG- -5'
26595 3' -63.1 NC_005357.1 + 21161 0.67 0.217577
Target:  5'- cGCCCUGGUucaacAGCGcGGCCUgcUGcGcGGCCu -3'
miRNA:   3'- -CGGGGCCG-----UCGCaCCGGG--AC-CuUCGG- -5'
26595 3' -63.1 NC_005357.1 + 26366 0.68 0.214261
Target:  5'- cGCCgCGcGCGGCGgccacgugcgcgaacUGGCCuacaaCUGGcAGGCCa -3'
miRNA:   3'- -CGGgGC-CGUCGC---------------ACCGG-----GACC-UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.