miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26596 5' -62.1 NC_005357.1 + 34885 1.07 0.000251
Target:  5'- gCGCCGCGGAUCGAGCACGCCGCCGAGc -3'
miRNA:   3'- -GCGGCGCCUAGCUCGUGCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 19951 0.82 0.022177
Target:  5'- gGCCGUGGAcaggcaacccagguuUCGGGCAgGCCGCCGAu -3'
miRNA:   3'- gCGGCGCCU---------------AGCUCGUgCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 41933 0.82 0.023887
Target:  5'- cCGCCGCGGcgC-AGUAUGCUGCCGAGg -3'
miRNA:   3'- -GCGGCGCCuaGcUCGUGCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 33512 0.78 0.04218
Target:  5'- aCGCC-CGaagccAUCGAGCGCGCCGCCGAu -3'
miRNA:   3'- -GCGGcGCc----UAGCUCGUGCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 33215 0.77 0.054365
Target:  5'- gCGCCGCaGAaCGuGCgccGCGCCGCCGAGc -3'
miRNA:   3'- -GCGGCGcCUaGCuCG---UGCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 38854 0.76 0.059141
Target:  5'- gGCCGCGGAUCGGuGUACGCCcaGCCc-- -3'
miRNA:   3'- gCGGCGCCUAGCU-CGUGCGG--CGGcuc -5'
26596 5' -62.1 NC_005357.1 + 14354 0.76 0.062723
Target:  5'- aCGCCGCGGccaccugcccgcuguUCGAGCAgacCGUCGCCGAc -3'
miRNA:   3'- -GCGGCGCCu--------------AGCUCGU---GCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 32345 0.76 0.068016
Target:  5'- cCGCCGCccaGGUCGcuGCGguCGCCGCCGAGg -3'
miRNA:   3'- -GCGGCGc--CUAGCu-CGU--GCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 16725 0.75 0.071914
Target:  5'- cCGCCGCGGGgcugguaUGAGCAgCGuuGCCGAa -3'
miRNA:   3'- -GCGGCGCCUa------GCUCGU-GCggCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 10997 0.74 0.084937
Target:  5'- aCGCCGCaGAUCGuGGCGuCGCCGuuGAu -3'
miRNA:   3'- -GCGGCGcCUAGC-UCGU-GCGGCggCUc -5'
26596 5' -62.1 NC_005357.1 + 11584 0.74 0.087316
Target:  5'- uGCCGCccaGGGcCGccGGCugGCCGCCGGGc -3'
miRNA:   3'- gCGGCG---CCUaGC--UCGugCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 27594 0.74 0.094837
Target:  5'- gGCCGCcaacGGcAUCGAccugggcgaagGCAgCGCCGCCGAGg -3'
miRNA:   3'- gCGGCG----CC-UAGCU-----------CGU-GCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 4036 0.74 0.094837
Target:  5'- uGCCgcGCGGGUCGAGCGCa--GCCGGGc -3'
miRNA:   3'- gCGG--CGCCUAGCUCGUGcggCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 604 0.73 0.108751
Target:  5'- cCGCCuGCGGGUCGgccAGCAgCGCCGUgGAc -3'
miRNA:   3'- -GCGG-CGCCUAGC---UCGU-GCGGCGgCUc -5'
26596 5' -62.1 NC_005357.1 + 18064 0.72 0.121238
Target:  5'- cCGgCGCGGGgugCGuGCugGgCCGCCGAa -3'
miRNA:   3'- -GCgGCGCCUa--GCuCGugC-GGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 1707 0.72 0.127971
Target:  5'- uCGCCGUGGGcCG-GCGUGCCGgCGAGg -3'
miRNA:   3'- -GCGGCGCCUaGCuCGUGCGGCgGCUC- -5'
26596 5' -62.1 NC_005357.1 + 38727 0.72 0.135047
Target:  5'- gCGCCGCauGGggC-AGCGCGUCGCCGuGg -3'
miRNA:   3'- -GCGGCG--CCuaGcUCGUGCGGCGGCuC- -5'
26596 5' -62.1 NC_005357.1 + 1943 0.71 0.138719
Target:  5'- uCGuCUGCGGGuucuggUCGAGCGCGCgGCCcuGGGg -3'
miRNA:   3'- -GC-GGCGCCU------AGCUCGUGCGgCGG--CUC- -5'
26596 5' -62.1 NC_005357.1 + 36811 0.71 0.154339
Target:  5'- gCGCCGCGccacGcgCGAaacGCACcCCGCCGAGu -3'
miRNA:   3'- -GCGGCGC----CuaGCU---CGUGcGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 9734 0.71 0.162733
Target:  5'- uGCaCGCGG--CGAGCACGUCGgCGAa -3'
miRNA:   3'- gCG-GCGCCuaGCUCGUGCGGCgGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.