miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26596 5' -62.1 NC_005357.1 + 163 0.66 0.339941
Target:  5'- cCGCagGCGGAUgcgccccggugucgcUGGGCaccgucACGCUGCCGGGc -3'
miRNA:   3'- -GCGg-CGCCUA---------------GCUCG------UGCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 604 0.73 0.108751
Target:  5'- cCGCCuGCGGGUCGgccAGCAgCGCCGUgGAc -3'
miRNA:   3'- -GCGG-CGCCUAGC---UCGU-GCGGCGgCUc -5'
26596 5' -62.1 NC_005357.1 + 1707 0.72 0.127971
Target:  5'- uCGCCGUGGGcCG-GCGUGCCGgCGAGg -3'
miRNA:   3'- -GCGGCGCCUaGCuCGUGCGGCgGCUC- -5'
26596 5' -62.1 NC_005357.1 + 1943 0.71 0.138719
Target:  5'- uCGuCUGCGGGuucuggUCGAGCGCGCgGCCcuGGGg -3'
miRNA:   3'- -GC-GGCGCCU------AGCUCGUGCGgCGG--CUC- -5'
26596 5' -62.1 NC_005357.1 + 3609 0.67 0.291973
Target:  5'- gGCCGUguauucGGAUgCGccauuCACGCCGCCGAa -3'
miRNA:   3'- gCGGCG------CCUA-GCuc---GUGCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 3736 0.66 0.34392
Target:  5'- uGCuCGCGGAUuugaUGAGgGCGgcacuucUCGCCGGGg -3'
miRNA:   3'- gCG-GCGCCUA----GCUCgUGC-------GGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 4036 0.74 0.094837
Target:  5'- uGCCgcGCGGGUCGAGCGCa--GCCGGGc -3'
miRNA:   3'- gCGG--CGCCUAGCUCGUGcggCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 4536 0.66 0.321308
Target:  5'- uGCUGgGcGGUCGuGC-CGCCGCgGAa -3'
miRNA:   3'- gCGGCgC-CUAGCuCGuGCGGCGgCUc -5'
26596 5' -62.1 NC_005357.1 + 4810 0.66 0.306372
Target:  5'- gCGCUGCGGGauu-GCugGCCGgCGAc -3'
miRNA:   3'- -GCGGCGCCUagcuCGugCGGCgGCUc -5'
26596 5' -62.1 NC_005357.1 + 5559 0.68 0.258304
Target:  5'- cCGCCaCGGuAUCGAcggcgccaacGCugGCCGCCa-- -3'
miRNA:   3'- -GCGGcGCC-UAGCU----------CGugCGGCGGcuc -5'
26596 5' -62.1 NC_005357.1 + 5809 0.68 0.251963
Target:  5'- gCGCCaGCGGAuagUCGGGCAUGgCgUGCCGcAGc -3'
miRNA:   3'- -GCGG-CGCCU---AGCUCGUGC-G-GCGGC-UC- -5'
26596 5' -62.1 NC_005357.1 + 5898 0.7 0.167082
Target:  5'- uCGCCaGCGuGGU-GAGUGUGCCGCCGGGa -3'
miRNA:   3'- -GCGG-CGC-CUAgCUCGUGCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 8310 0.66 0.328978
Target:  5'- aGCCaGCGGu----GCGCGCUGCuCGGGg -3'
miRNA:   3'- gCGG-CGCCuagcuCGUGCGGCG-GCUC- -5'
26596 5' -62.1 NC_005357.1 + 8373 0.66 0.313773
Target:  5'- cCGCCGCGcucGAaucuUCGAGaauCGCCGCCc-- -3'
miRNA:   3'- -GCGGCGC---CU----AGCUCgu-GCGGCGGcuc -5'
26596 5' -62.1 NC_005357.1 + 8435 0.69 0.222166
Target:  5'- gCGUCGCGGAacaUCG-GCGCGaugucggCGUCGAGg -3'
miRNA:   3'- -GCGGCGCCU---AGCuCGUGCg------GCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 8632 0.7 0.185536
Target:  5'- cCGCUGCGGuggCGAGguCGCCgGCCu-- -3'
miRNA:   3'- -GCGGCGCCua-GCUCguGCGG-CGGcuc -5'
26596 5' -62.1 NC_005357.1 + 9732 0.66 0.332083
Target:  5'- aGCCGCGGGcgaacugcucguggUGGGCGCGCuuCGCCu-- -3'
miRNA:   3'- gCGGCGCCUa-------------GCUCGUGCG--GCGGcuc -5'
26596 5' -62.1 NC_005357.1 + 9734 0.71 0.162733
Target:  5'- uGCaCGCGG--CGAGCACGUCGgCGAa -3'
miRNA:   3'- gCG-GCGCCuaGCUCGUGCGGCgGCUc -5'
26596 5' -62.1 NC_005357.1 + 10997 0.74 0.084937
Target:  5'- aCGCCGCaGAUCGuGGCGuCGCCGuuGAu -3'
miRNA:   3'- -GCGGCGcCUAGC-UCGU-GCGGCggCUc -5'
26596 5' -62.1 NC_005357.1 + 11186 0.66 0.321308
Target:  5'- uCGCC-CGGcUCGuAGCugggcCGCgCGCCGGGg -3'
miRNA:   3'- -GCGGcGCCuAGC-UCGu----GCG-GCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.