miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26596 5' -62.1 NC_005357.1 + 19601 0.68 0.251963
Target:  5'- -uCUGCGGGUCGAuCuuGCCGuCCGGGg -3'
miRNA:   3'- gcGGCGCCUAGCUcGugCGGC-GGCUC- -5'
26596 5' -62.1 NC_005357.1 + 8632 0.7 0.185536
Target:  5'- cCGCUGCGGuggCGAGguCGCCgGCCu-- -3'
miRNA:   3'- -GCGGCGCCua-GCUCguGCGG-CGGcuc -5'
26596 5' -62.1 NC_005357.1 + 30123 0.7 0.190423
Target:  5'- gGCCGCGcca-GAaCACGCCGCCGGc -3'
miRNA:   3'- gCGGCGCcuagCUcGUGCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 24323 0.69 0.202614
Target:  5'- aGCCGCGGGUCaggcggcaGAGCgAUGCCcguguuguuggucggGUCGAGg -3'
miRNA:   3'- gCGGCGCCUAG--------CUCG-UGCGG---------------CGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 22072 0.69 0.211113
Target:  5'- gGUCGCGG-UCG-GCGCGCgGCuCGAu -3'
miRNA:   3'- gCGGCGCCuAGCuCGUGCGgCG-GCUc -5'
26596 5' -62.1 NC_005357.1 + 18577 0.68 0.227876
Target:  5'- gCGCuCGCGGugaCGGcCugGCCGuCCGAGa -3'
miRNA:   3'- -GCG-GCGCCua-GCUcGugCGGC-GGCUC- -5'
26596 5' -62.1 NC_005357.1 + 35051 0.68 0.233709
Target:  5'- uCGCCGCGGu----GCcCGCCGCUGGa -3'
miRNA:   3'- -GCGGCGCCuagcuCGuGCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 28558 0.68 0.245751
Target:  5'- gGCCGcCGGccAUCGcGGCGCGCaCGUCGGc -3'
miRNA:   3'- gCGGC-GCC--UAGC-UCGUGCG-GCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 22903 0.68 0.251963
Target:  5'- uGCUGCGaGUCGAGCAguUGCUGCUGc- -3'
miRNA:   3'- gCGGCGCcUAGCUCGU--GCGGCGGCuc -5'
26596 5' -62.1 NC_005357.1 + 23338 0.7 0.167082
Target:  5'- aGCCGCGcaauUCGAcgGCcuCGCCGCCGAu -3'
miRNA:   3'- gCGGCGCcu--AGCU--CGu-GCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 5898 0.7 0.167082
Target:  5'- uCGCCaGCGuGGU-GAGUGUGCCGCCGGGa -3'
miRNA:   3'- -GCGG-CGC-CUAgCUCGUGCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 36811 0.71 0.154339
Target:  5'- gCGCCGCGccacGcgCGAaacGCACcCCGCCGAGu -3'
miRNA:   3'- -GCGGCGC----CuaGCU---CGUGcGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 19951 0.82 0.022177
Target:  5'- gGCCGUGGAcaggcaacccagguuUCGGGCAgGCCGCCGAu -3'
miRNA:   3'- gCGGCGCCU---------------AGCUCGUgCGGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 32345 0.76 0.068016
Target:  5'- cCGCCGCccaGGUCGcuGCGguCGCCGCCGAGg -3'
miRNA:   3'- -GCGGCGc--CUAGCu-CGU--GCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 11584 0.74 0.087316
Target:  5'- uGCCGCccaGGGcCGccGGCugGCCGCCGGGc -3'
miRNA:   3'- gCGGCG---CCUaGC--UCGugCGGCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 4036 0.74 0.094837
Target:  5'- uGCCgcGCGGGUCGAGCGCa--GCCGGGc -3'
miRNA:   3'- gCGG--CGCCUAGCUCGUGcggCGGCUC- -5'
26596 5' -62.1 NC_005357.1 + 604 0.73 0.108751
Target:  5'- cCGCCuGCGGGUCGgccAGCAgCGCCGUgGAc -3'
miRNA:   3'- -GCGG-CGCCUAGC---UCGU-GCGGCGgCUc -5'
26596 5' -62.1 NC_005357.1 + 18064 0.72 0.121238
Target:  5'- cCGgCGCGGGgugCGuGCugGgCCGCCGAa -3'
miRNA:   3'- -GCgGCGCCUa--GCuCGugC-GGCGGCUc -5'
26596 5' -62.1 NC_005357.1 + 1707 0.72 0.127971
Target:  5'- uCGCCGUGGGcCG-GCGUGCCGgCGAGg -3'
miRNA:   3'- -GCGGCGCCUaGCuCGUGCGGCgGCUC- -5'
26596 5' -62.1 NC_005357.1 + 38727 0.72 0.135047
Target:  5'- gCGCCGCauGGggC-AGCGCGUCGCCGuGg -3'
miRNA:   3'- -GCGGCG--CCuaGcUCGUGCGGCGGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.