miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26597 3' -59.5 NC_005357.1 + 35061 1.1 0.000282
Target:  5'- gCCCGCCGCUGGACGAACGACGCCGAGg -3'
miRNA:   3'- -GGGCGGCGACCUGCUUGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 3762 0.78 0.077
Target:  5'- gCCGCCGCUGGACGuagccuCGGucgUGCCGAa -3'
miRNA:   3'- gGGCGGCGACCUGCuu----GCU---GCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 37633 0.74 0.132192
Target:  5'- uCCCGCagcgccagccggcgUGCUGGGCGcagugugGGCGaACGCCGAGa -3'
miRNA:   3'- -GGGCG--------------GCGACCUGC-------UUGC-UGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 33107 0.74 0.133633
Target:  5'- gCCCGCCGCgccGACGuGCGccgccagguCGCCGAGg -3'
miRNA:   3'- -GGGCGGCGac-CUGCuUGCu--------GCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 29789 0.74 0.133633
Target:  5'- aCCCGaCGCcaaaGGACGGcagcaGCGAUGCCGAGc -3'
miRNA:   3'- -GGGCgGCGa---CCUGCU-----UGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 32853 0.74 0.133633
Target:  5'- cCUgGCCGCa-GACGGuCGGCGCCGAGa -3'
miRNA:   3'- -GGgCGGCGacCUGCUuGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 29006 0.74 0.143738
Target:  5'- gCCUGCCGUgGGACGAgaaccguuaccgcaACGAUGCCGc- -3'
miRNA:   3'- -GGGCGGCGaCCUGCU--------------UGCUGCGGCuc -5'
26597 3' -59.5 NC_005357.1 + 16391 0.73 0.165626
Target:  5'- gCCCGCCGCgcGGGCuuuGAUGccauCGCCGAGg -3'
miRNA:   3'- -GGGCGGCGa-CCUGc--UUGCu---GCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 34635 0.73 0.174176
Target:  5'- -gCGCCuGCUGGGCGgcgaaggGugGACGCCGGc -3'
miRNA:   3'- ggGCGG-CGACCUGC-------UugCUGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 17308 0.72 0.182636
Target:  5'- cCCCGUgGCUGGACaagaagcacccgcuGuaucccACGGCGCCGGGc -3'
miRNA:   3'- -GGGCGgCGACCUG--------------Cu-----UGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 16759 0.72 0.188971
Target:  5'- aUCCGCCgGCUGauGACGuacAUGACGCCGGc -3'
miRNA:   3'- -GGGCGG-CGAC--CUGCu--UGCUGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 14536 0.72 0.193974
Target:  5'- aUCCGCgacgUGCUGGGCGAGC-ACGCCaAGa -3'
miRNA:   3'- -GGGCG----GCGACCUGCUUGcUGCGGcUC- -5'
26597 3' -59.5 NC_005357.1 + 22320 0.72 0.199093
Target:  5'- -aUGCUGCUGGccgugcCGAACG-CGCCGAGu -3'
miRNA:   3'- ggGCGGCGACCu-----GCUUGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 21147 0.72 0.199093
Target:  5'- gCCGaCCGCUGGGCcGACacuuACGCCGAc -3'
miRNA:   3'- gGGC-GGCGACCUGcUUGc---UGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 36691 0.72 0.204329
Target:  5'- gCCCgGCgCGCUGGGCGAucuguGCGACauccucaagguGCCGAc -3'
miRNA:   3'- -GGG-CG-GCGACCUGCU-----UGCUG-----------CGGCUc -5'
26597 3' -59.5 NC_005357.1 + 3335 0.72 0.204329
Target:  5'- gCUGUCGCUGGugGAAUGcgucACGCCa-- -3'
miRNA:   3'- gGGCGGCGACCugCUUGC----UGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 27591 0.72 0.208066
Target:  5'- gCUgGCCGCcaacggcaucgaccUGGGCGAaggcaGCGcCGCCGAGg -3'
miRNA:   3'- -GGgCGGCG--------------ACCUGCU-----UGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 16723 0.71 0.215161
Target:  5'- cCCCGCCGCgGGGCuGGuaugagcaGCGuuGCCGAa -3'
miRNA:   3'- -GGGCGGCGaCCUG-CU--------UGCugCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 1302 0.71 0.232327
Target:  5'- aCCGCCGCgcccaGGGCGA-CGGCcaccagGCCGAc -3'
miRNA:   3'- gGGCGGCGa----CCUGCUuGCUG------CGGCUc -5'
26597 3' -59.5 NC_005357.1 + 40360 0.71 0.244402
Target:  5'- aUCGUggUGCUGGGCG-ACGACcCCGAGg -3'
miRNA:   3'- gGGCG--GCGACCUGCuUGCUGcGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.