miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26597 3' -59.5 NC_005357.1 + 11233 0.67 0.428093
Target:  5'- uCCCGCCcacgcccacuaGCgUGG-CGAugaggguuugcgcuGCGGCGCUGGGa -3'
miRNA:   3'- -GGGCGG-----------CG-ACCuGCU--------------UGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 11841 0.69 0.327971
Target:  5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3'
miRNA:   3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 15916 0.68 0.363506
Target:  5'- gCCGCUGCUGcuGAUGAaccacacgauaggcuGCGGCGCCu-- -3'
miRNA:   3'- gGGCGGCGAC--CUGCU---------------UGCUGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 30369 0.68 0.376215
Target:  5'- aCCCGCCGCUgcuguagGGugGGucggugauaACGGCGUCc-- -3'
miRNA:   3'- -GGGCGGCGA-------CCugCU---------UGCUGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 18432 0.67 0.403414
Target:  5'- gUCCGCCGagucCUGcaccgaaaacguGACGGucGCGGCGCCGGc -3'
miRNA:   3'- -GGGCGGC----GAC------------CUGCU--UGCUGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 8994 0.67 0.41245
Target:  5'- cCUCGCCGCgcggGGGCGcuuccagcaGGCGGCGCa--- -3'
miRNA:   3'- -GGGCGGCGa---CCUGC---------UUGCUGCGgcuc -5'
26597 3' -59.5 NC_005357.1 + 35027 0.67 0.41245
Target:  5'- gCCCgGCUucaaGCUGGugGAAgGuCGCCGcGg -3'
miRNA:   3'- -GGG-CGG----CGACCugCUUgCuGCGGCuC- -5'
26597 3' -59.5 NC_005357.1 + 4035 0.67 0.41245
Target:  5'- -aUGCCGCgcgGGuCGAGCG-CaGCCGGGc -3'
miRNA:   3'- ggGCGGCGa--CCuGCUUGCuG-CGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 28281 0.67 0.41245
Target:  5'- aCCGCgCGCUGGGac-ACGGCGCaGAa -3'
miRNA:   3'- gGGCG-GCGACCUgcuUGCUGCGgCUc -5'
26597 3' -59.5 NC_005357.1 + 40121 0.69 0.312689
Target:  5'- gCCUGUCGCUGGACGcccGCGACuauuUCGAc -3'
miRNA:   3'- -GGGCGGCGACCUGCu--UGCUGc---GGCUc -5'
26597 3' -59.5 NC_005357.1 + 25761 0.69 0.297954
Target:  5'- gCgCGCUGCUGGGCGGcggcaACGAUgGCCGcGa -3'
miRNA:   3'- -GgGCGGCGACCUGCU-----UGCUG-CGGCuC- -5'
26597 3' -59.5 NC_005357.1 + 14060 0.7 0.283762
Target:  5'- gCCCGgCGCUGGGCGu-CGuuGCCuAGg -3'
miRNA:   3'- -GGGCgGCGACCUGCuuGCugCGGcUC- -5'
26597 3' -59.5 NC_005357.1 + 3762 0.78 0.077
Target:  5'- gCCGCCGCUGGACGuagccuCGGucgUGCCGAa -3'
miRNA:   3'- gGGCGGCGACCUGCuu----GCU---GCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 32853 0.74 0.133633
Target:  5'- cCUgGCCGCa-GACGGuCGGCGCCGAGa -3'
miRNA:   3'- -GGgCGGCGacCUGCUuGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 22320 0.72 0.199093
Target:  5'- -aUGCUGCUGGccgugcCGAACG-CGCCGAGu -3'
miRNA:   3'- ggGCGGCGACCu-----GCUUGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 36691 0.72 0.204329
Target:  5'- gCCCgGCgCGCUGGGCGAucuguGCGACauccucaagguGCCGAc -3'
miRNA:   3'- -GGG-CG-GCGACCUGCU-----UGCUG-----------CGGCUc -5'
26597 3' -59.5 NC_005357.1 + 1302 0.71 0.232327
Target:  5'- aCCGCCGCgcccaGGGCGA-CGGCcaccagGCCGAc -3'
miRNA:   3'- gGGCGGCGa----CCUGCUuGCUG------CGGCUc -5'
26597 3' -59.5 NC_005357.1 + 34885 0.7 0.256993
Target:  5'- -gCGCCGC-GGAuCGAgcACGcCGCCGAGc -3'
miRNA:   3'- ggGCGGCGaCCU-GCU--UGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 32344 0.7 0.263486
Target:  5'- aCCGCCGCccaGGucgcuGCGGuCGcCGCCGAGg -3'
miRNA:   3'- gGGCGGCGa--CC-----UGCUuGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 40950 0.7 0.283762
Target:  5'- gCCgGUgGC-GGAagaaGAACGGCGUCGAGg -3'
miRNA:   3'- -GGgCGgCGaCCUg---CUUGCUGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.