miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26597 3' -59.5 NC_005357.1 + 1302 0.71 0.232327
Target:  5'- aCCGCCGCgcccaGGGCGA-CGGCcaccagGCCGAc -3'
miRNA:   3'- gGGCGGCGa----CCUGCUuGCUG------CGGCUc -5'
26597 3' -59.5 NC_005357.1 + 2745 0.69 0.320262
Target:  5'- gCCCGgCGCUGcuCGGGCG-UGCCGAc -3'
miRNA:   3'- -GGGCgGCGACcuGCUUGCuGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 3335 0.72 0.204329
Target:  5'- gCUGUCGCUGGugGAAUGcgucACGCCa-- -3'
miRNA:   3'- gGGCGGCGACCugCUUGC----UGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 3762 0.78 0.077
Target:  5'- gCCGCCGCUGGACGuagccuCGGucgUGCCGAa -3'
miRNA:   3'- gGGCGGCGACCUGCuu----GCU---GCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 4035 0.67 0.41245
Target:  5'- -aUGCCGCgcgGGuCGAGCG-CaGCCGGGc -3'
miRNA:   3'- ggGCGGCGa--CCuGCUUGCuG-CGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 4041 0.66 0.479009
Target:  5'- gCCgGCCGC-GG-CGAGCGGCagGCCa-- -3'
miRNA:   3'- -GGgCGGCGaCCuGCUUGCUG--CGGcuc -5'
26597 3' -59.5 NC_005357.1 + 7171 0.66 0.469169
Target:  5'- gCCgGgCGCUugucGGAUucggGGGCGACGCUGGGc -3'
miRNA:   3'- -GGgCgGCGA----CCUG----CUUGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 8994 0.67 0.41245
Target:  5'- cCUCGCCGCgcggGGGCGcuuccagcaGGCGGCGCa--- -3'
miRNA:   3'- -GGGCGGCGa---CCUGC---------UUGCUGCGgcuc -5'
26597 3' -59.5 NC_005357.1 + 10381 0.67 0.385724
Target:  5'- gUCGCauaGUUGuGCGAGCG-CGCCGGGu -3'
miRNA:   3'- gGGCGg--CGACcUGCUUGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 11148 0.66 0.449805
Target:  5'- gCCUGCUGCUGGGCcgccuGCGcacguugcguGCGCUGGu -3'
miRNA:   3'- -GGGCGGCGACCUGcu---UGC----------UGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 11193 0.68 0.343798
Target:  5'- gCUCGuaGCUGGGCc-GCG-CGCCGGGg -3'
miRNA:   3'- -GGGCggCGACCUGcuUGCuGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 11233 0.67 0.428093
Target:  5'- uCCCGCCcacgcccacuaGCgUGG-CGAugaggguuugcgcuGCGGCGCUGGGa -3'
miRNA:   3'- -GGGCGG-----------CG-ACCuGCU--------------UGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 11841 0.69 0.327971
Target:  5'- gCCgCGCCGCgguuggccUGGGCGAACcccGCGCCa-- -3'
miRNA:   3'- -GG-GCGGCG--------ACCUGCUUGc--UGCGGcuc -5'
26597 3' -59.5 NC_005357.1 + 11928 0.66 0.447893
Target:  5'- aCCGCCgugcccagGCUGGACaguaccgacuCGAUGCCGGu -3'
miRNA:   3'- gGGCGG--------CGACCUGcuu-------GCUGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 13390 0.67 0.394505
Target:  5'- gCCGCCGgUGGGuauCGAccuggccgaagcGCGGCGCCuGGu -3'
miRNA:   3'- gGGCGGCgACCU---GCU------------UGCUGCGGcUC- -5'
26597 3' -59.5 NC_005357.1 + 13500 0.66 0.44029
Target:  5'- aCCgCGCCuuUGGGCGAgguaaGCGguuugccguccGCGCCGAa -3'
miRNA:   3'- -GG-GCGGcgACCUGCU-----UGC-----------UGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 13557 0.67 0.403414
Target:  5'- -aCGCCaGCagcgaGGACGuggcGCGGCGCUGGGa -3'
miRNA:   3'- ggGCGG-CGa----CCUGCu---UGCUGCGGCUC- -5'
26597 3' -59.5 NC_005357.1 + 13688 0.7 0.268775
Target:  5'- aCCG-CGCUGGACGAugccaagGCGcucauccucgcguGCGCCGAc -3'
miRNA:   3'- gGGCgGCGACCUGCU-------UGC-------------UGCGGCUc -5'
26597 3' -59.5 NC_005357.1 + 14060 0.7 0.283762
Target:  5'- gCCCGgCGCUGGGCGu-CGuuGCCuAGg -3'
miRNA:   3'- -GGGCgGCGACCUGCuuGCugCGGcUC- -5'
26597 3' -59.5 NC_005357.1 + 14080 0.7 0.272798
Target:  5'- aUCCGCgCGCUGcccGACGAggccaaggccaucgaGucCGACGCCGAGc -3'
miRNA:   3'- -GGGCG-GCGAC---CUGCU---------------U--GCUGCGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.