miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26598 3' -59.6 NC_005357.1 + 37412 0.66 0.471812
Target:  5'- gCAUCGCggcgcugaaaGCGGacugcGCCGACCUGCuguUCGCc -3'
miRNA:   3'- gGUAGUG----------CGCU-----CGGCUGGGCG---AGCGc -5'
26598 3' -59.6 NC_005357.1 + 10196 0.66 0.471812
Target:  5'- aCGUCAaGCGcacGCCGGCCCGauggUCgGCGg -3'
miRNA:   3'- gGUAGUgCGCu--CGGCUGGGCg---AG-CGC- -5'
26598 3' -59.6 NC_005357.1 + 33587 0.66 0.471812
Target:  5'- gCCA--ACGC--GCUGGCCCGCgUUGCGg -3'
miRNA:   3'- -GGUagUGCGcuCGGCUGGGCG-AGCGC- -5'
26598 3' -59.6 NC_005357.1 + 9528 0.66 0.465924
Target:  5'- gCAUCAUGCugcGGCCcuguucggccagugcGAUCUGCUCGCc -3'
miRNA:   3'- gGUAGUGCGc--UCGG---------------CUGGGCGAGCGc -5'
26598 3' -59.6 NC_005357.1 + 8220 0.66 0.452338
Target:  5'- gCCAguucgUGCGCG-GCCGugCC-CUCGuCGg -3'
miRNA:   3'- -GGUa----GUGCGCuCGGCugGGcGAGC-GC- -5'
26598 3' -59.6 NC_005357.1 + 13223 0.66 0.452338
Target:  5'- gCCAUgCGCGCGu-CCGACCUGC-CGg- -3'
miRNA:   3'- -GGUA-GUGCGCucGGCUGGGCGaGCgc -5'
26598 3' -59.6 NC_005357.1 + 18400 0.66 0.451376
Target:  5'- uCCGUCGCGuCGccuucgcugaauuGGCCGACgCGCccaccuUCGCc -3'
miRNA:   3'- -GGUAGUGC-GC-------------UCGGCUGgGCG------AGCGc -5'
26598 3' -59.6 NC_005357.1 + 11462 0.66 0.442767
Target:  5'- aCCGUCACGCcgaaguAGUCcGCCaGCUUGCGu -3'
miRNA:   3'- -GGUAGUGCGc-----UCGGcUGGgCGAGCGC- -5'
26598 3' -59.6 NC_005357.1 + 15239 0.66 0.442767
Target:  5'- aUCAUCaACGgcagaGGGUCGGCCUGC-CGCa -3'
miRNA:   3'- -GGUAG-UGCg----CUCGGCUGGGCGaGCGc -5'
26598 3' -59.6 NC_005357.1 + 25301 0.66 0.442767
Target:  5'- -gGUCGUGCG-GCCGGCCCugccaccggcGCUCGUc -3'
miRNA:   3'- ggUAGUGCGCuCGGCUGGG----------CGAGCGc -5'
26598 3' -59.6 NC_005357.1 + 1748 0.66 0.442767
Target:  5'- aCAcCGgGCGgucauGGCCGGCCUGCgccuggCGCGu -3'
miRNA:   3'- gGUaGUgCGC-----UCGGCUGGGCGa-----GCGC- -5'
26598 3' -59.6 NC_005357.1 + 19895 0.66 0.442767
Target:  5'- aCCGgcaCGCGCGcGCUGcGCgUGCUCGCu -3'
miRNA:   3'- -GGUa--GUGCGCuCGGC-UGgGCGAGCGc -5'
26598 3' -59.6 NC_005357.1 + 23860 0.66 0.442767
Target:  5'- gCCGUCAcCGCGAGCgCGGCCUcCaccgaCGUGa -3'
miRNA:   3'- -GGUAGU-GCGCUCG-GCUGGGcGa----GCGC- -5'
26598 3' -59.6 NC_005357.1 + 19225 0.66 0.433311
Target:  5'- gCCGaauUCAcCGaCGAGgCCGACCUGCugcugUCGCa -3'
miRNA:   3'- -GGU---AGU-GC-GCUC-GGCUGGGCG-----AGCGc -5'
26598 3' -59.6 NC_005357.1 + 36036 0.66 0.433311
Target:  5'- aCUA-CAC-CGGGCCGGCCgGCcUGCGc -3'
miRNA:   3'- -GGUaGUGcGCUCGGCUGGgCGaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 36134 0.66 0.423974
Target:  5'- gCCGUCAauguCGUGGG-CGACCUGUUCGg- -3'
miRNA:   3'- -GGUAGU----GCGCUCgGCUGGGCGAGCgc -5'
26598 3' -59.6 NC_005357.1 + 12542 0.66 0.423974
Target:  5'- cCUGUCAUGCcggggggggugGuGCUaGACCCGUUCGCa -3'
miRNA:   3'- -GGUAGUGCG-----------CuCGG-CUGGGCGAGCGc -5'
26598 3' -59.6 NC_005357.1 + 39167 0.67 0.414758
Target:  5'- aCUAUCugGCGcggaAGCUGAauCCCGC-CGgGg -3'
miRNA:   3'- -GGUAGugCGC----UCGGCU--GGGCGaGCgC- -5'
26598 3' -59.6 NC_005357.1 + 33639 0.67 0.413843
Target:  5'- aCCG--GCGCG-GCCGACCCaucgugcGC-CGCGu -3'
miRNA:   3'- -GGUagUGCGCuCGGCUGGG-------CGaGCGC- -5'
26598 3' -59.6 NC_005357.1 + 20353 0.67 0.412929
Target:  5'- gCCAUCGagcCGCGcGCCGACCgCGacccgagcaagCGCGa -3'
miRNA:   3'- -GGUAGU---GCGCuCGGCUGG-GCga---------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.