miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2660 5' -59.2 NC_001491.2 + 91817 0.66 0.829358
Target:  5'- uGGgcaGCCgGCUCuACau-CUGCCGCGCc -3'
miRNA:   3'- -CCa--UGGgCGAGcUGaguGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 55006 0.66 0.829358
Target:  5'- cGUGaaCGCUgCG-CUCGCCGC-GCGCc -3'
miRNA:   3'- cCAUggGCGA-GCuGAGUGGCGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 136266 0.66 0.829358
Target:  5'- --aACCCaGCUCGcCUUguaGCCGCUgguauaGCGCg -3'
miRNA:   3'- ccaUGGG-CGAGCuGAG---UGGCGG------CGCG- -5'
2660 5' -59.2 NC_001491.2 + 117954 0.66 0.829358
Target:  5'- aGG-ACaaGCUCGccagcCUCACCGCUGuUGCu -3'
miRNA:   3'- -CCaUGggCGAGCu----GAGUGGCGGC-GCG- -5'
2660 5' -59.2 NC_001491.2 + 5338 0.66 0.821177
Target:  5'- gGGgacGCCgGCUgGGCggcaGCCGCCGgGg -3'
miRNA:   3'- -CCa--UGGgCGAgCUGag--UGGCGGCgCg -5'
2660 5' -59.2 NC_001491.2 + 60710 0.66 0.821177
Target:  5'- gGGUcCgCCGCaauucUCGuACUCACuCGUgGCGCu -3'
miRNA:   3'- -CCAuG-GGCG-----AGC-UGAGUG-GCGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 148444 0.66 0.812836
Target:  5'- --cGCCCGCggCcGCUCugCcCCGCGUu -3'
miRNA:   3'- ccaUGGGCGa-GcUGAGugGcGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 69405 0.66 0.811994
Target:  5'- --cAUCCGCgCGGCUCugUacggcguGCUGCGCc -3'
miRNA:   3'- ccaUGGGCGaGCUGAGugG-------CGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 8878 0.66 0.804343
Target:  5'- -cUGCCCGagcaGAgCUUcCCGCUGCGCg -3'
miRNA:   3'- ccAUGGGCgag-CU-GAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 12066 0.66 0.795704
Target:  5'- aGGUGCUuaCGCUCGccuCUCGgCGCCuccuCGCc -3'
miRNA:   3'- -CCAUGG--GCGAGCu--GAGUgGCGGc---GCG- -5'
2660 5' -59.2 NC_001491.2 + 110118 0.66 0.795704
Target:  5'- --gACacggaCGCUgCGACUgC-CCGCUGCGCa -3'
miRNA:   3'- ccaUGg----GCGA-GCUGA-GuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 82299 0.66 0.786928
Target:  5'- -cUACUaCGCUCGACgaucaaCACCaucaCCGCGCu -3'
miRNA:   3'- ccAUGG-GCGAGCUGa-----GUGGc---GGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 143587 0.66 0.786928
Target:  5'- -uUGCuCUGCUgcugugcgaagCGuCUCugCGCCGCGUg -3'
miRNA:   3'- ccAUG-GGCGA-----------GCuGAGugGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 5206 0.66 0.786928
Target:  5'- aGGgcgACCgGgUCGGCcgcgucccCACCGCCGgGUg -3'
miRNA:   3'- -CCa--UGGgCgAGCUGa-------GUGGCGGCgCG- -5'
2660 5' -59.2 NC_001491.2 + 32419 0.66 0.786928
Target:  5'- --cACCCGCUcCGGCUCcaGCUuCgGCGCc -3'
miRNA:   3'- ccaUGGGCGA-GCUGAG--UGGcGgCGCG- -5'
2660 5' -59.2 NC_001491.2 + 131630 0.66 0.786928
Target:  5'- -cUGCgCCGCUgGACUCGCgGagguaGCGCc -3'
miRNA:   3'- ccAUG-GGCGAgCUGAGUGgCgg---CGCG- -5'
2660 5' -59.2 NC_001491.2 + 12592 0.66 0.786928
Target:  5'- ---cCCCcCUcCGACggcCGCCGCCGCGg -3'
miRNA:   3'- ccauGGGcGA-GCUGa--GUGGCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 72489 0.67 0.778022
Target:  5'- uGUAcCCCGC-CGAUUgCACCGUCuggguguaGCGCu -3'
miRNA:   3'- cCAU-GGGCGaGCUGA-GUGGCGG--------CGCG- -5'
2660 5' -59.2 NC_001491.2 + 4589 0.67 0.778022
Target:  5'- gGGUugGCCCGCUUGcgcuucgacGCUC-CCGCCagaGCc -3'
miRNA:   3'- -CCA--UGGGCGAGC---------UGAGuGGCGGcg-CG- -5'
2660 5' -59.2 NC_001491.2 + 3470 0.67 0.776226
Target:  5'- --gGCCCGCUCGACcaggucccugaguUCguagagggagaggGCCGCCGUc- -3'
miRNA:   3'- ccaUGGGCGAGCUG-------------AG-------------UGGCGGCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.