miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2660 5' -59.2 NC_001491.2 + 148444 0.66 0.812836
Target:  5'- --cGCCCGCggCcGCUCugCcCCGCGUu -3'
miRNA:   3'- ccaUGGGCGa-GcUGAGugGcGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 143587 0.66 0.786928
Target:  5'- -uUGCuCUGCUgcugugcgaagCGuCUCugCGCCGCGUg -3'
miRNA:   3'- ccAUG-GGCGA-----------GCuGAGugGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 136910 0.74 0.347079
Target:  5'- --aGCCaCGC--GACUCACgGCCGCGCa -3'
miRNA:   3'- ccaUGG-GCGagCUGAGUGgCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 136266 0.66 0.829358
Target:  5'- --aACCCaGCUCGcCUUguaGCCGCUgguauaGCGCg -3'
miRNA:   3'- ccaUGGG-CGAGCuGAG---UGGCGG------CGCG- -5'
2660 5' -59.2 NC_001491.2 + 131630 0.66 0.786928
Target:  5'- -cUGCgCCGCUgGACUCGCgGagguaGCGCc -3'
miRNA:   3'- ccAUG-GGCGAgCUGAGUGgCgg---CGCG- -5'
2660 5' -59.2 NC_001491.2 + 117954 0.66 0.829358
Target:  5'- aGG-ACaaGCUCGccagcCUCACCGCUGuUGCu -3'
miRNA:   3'- -CCaUGggCGAGCu----GAGUGGCGGC-GCG- -5'
2660 5' -59.2 NC_001491.2 + 117754 0.69 0.642335
Target:  5'- uGGUggcAUCCGCUCGggggaguACUCugacaagGCCGCUGCGg -3'
miRNA:   3'- -CCA---UGGGCGAGC-------UGAG-------UGGCGGCGCg -5'
2660 5' -59.2 NC_001491.2 + 116835 0.68 0.712736
Target:  5'- cGUAgUaGCgaGACgCACCGCCGCGCg -3'
miRNA:   3'- cCAUgGgCGagCUGaGUGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 110118 0.66 0.795704
Target:  5'- --gACacggaCGCUgCGACUgC-CCGCUGCGCa -3'
miRNA:   3'- ccaUGg----GCGA-GCUGA-GuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 100433 0.68 0.683632
Target:  5'- --aGCCCGCUCGcaGCaugUCAuaGUCGCGCc -3'
miRNA:   3'- ccaUGGGCGAGC--UG---AGUggCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 97260 0.69 0.634437
Target:  5'- --aGCCUGCUUGGCaUC-UUGCUGCGCg -3'
miRNA:   3'- ccaUGGGCGAGCUG-AGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 91817 0.66 0.829358
Target:  5'- uGGgcaGCCgGCUCuACau-CUGCCGCGCc -3'
miRNA:   3'- -CCa--UGGgCGAGcUGaguGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 90103 0.69 0.664018
Target:  5'- --gAgCCGCUU--C-CGCCGCCGCGCg -3'
miRNA:   3'- ccaUgGGCGAGcuGaGUGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 89204 1.13 0.000888
Target:  5'- uGGUACCCGCUCGACUCACCGCCGCGCa -3'
miRNA:   3'- -CCAUGGGCGAGCUGAGUGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 82299 0.66 0.786928
Target:  5'- -cUACUaCGCUCGACgaucaaCACCaucaCCGCGCu -3'
miRNA:   3'- ccAUGG-GCGAGCUGa-----GUGGc---GGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76233 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76201 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76169 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76137 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5'
2660 5' -59.2 NC_001491.2 + 76105 0.68 0.703088
Target:  5'- --aGCCC--UCG-CUC-CCGCCGCGCc -3'
miRNA:   3'- ccaUGGGcgAGCuGAGuGGCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.