miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26600 3' -55.9 NC_005357.1 + 7540 0.66 0.600434
Target:  5'- cGCuCGGCGgCGUGCUCGAuCcGcgGCg -3'
miRNA:   3'- cCG-GCUGCgGCACGAGUUcGuCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 31259 0.66 0.589331
Target:  5'- cGGCCGAccagcgcaCGCaaCGUGCgCAGGCGGcccaGCa -3'
miRNA:   3'- -CCGGCU--------GCG--GCACGaGUUCGUCua--CG- -5'
26600 3' -55.9 NC_005357.1 + 30324 0.66 0.622716
Target:  5'- uGCCGAUugaaaCCGUGCUCAaccAGCcgaaGGAaGCg -3'
miRNA:   3'- cCGGCUGc----GGCACGAGU---UCG----UCUaCG- -5'
26600 3' -55.9 NC_005357.1 + 8229 0.66 0.633874
Target:  5'- uGGUCGGCgGCCGUcagcagcuugcGCuUCAAGCggcccAGGUGUu -3'
miRNA:   3'- -CCGGCUG-CGGCA-----------CG-AGUUCG-----UCUACG- -5'
26600 3' -55.9 NC_005357.1 + 18164 0.66 0.578264
Target:  5'- -uCCGGCGCCacGCUCAAGguGGcaaGCc -3'
miRNA:   3'- ccGGCUGCGGcaCGAGUUCguCUa--CG- -5'
26600 3' -55.9 NC_005357.1 + 32154 0.66 0.633874
Target:  5'- aGGCCGAacuCGaCCuUGC-CAAGCAGuuccGCg -3'
miRNA:   3'- -CCGGCU---GC-GGcACGaGUUCGUCua--CG- -5'
26600 3' -55.9 NC_005357.1 + 1533 0.66 0.589331
Target:  5'- aGCCGAUGCCGUuCUU--GUGGAUGa -3'
miRNA:   3'- cCGGCUGCGGCAcGAGuuCGUCUACg -5'
26600 3' -55.9 NC_005357.1 + 35848 0.66 0.622716
Target:  5'- uGCCG--GCCGUGCU-GGGCuacuuccucaaGGAUGCg -3'
miRNA:   3'- cCGGCugCGGCACGAgUUCG-----------UCUACG- -5'
26600 3' -55.9 NC_005357.1 + 616 0.66 0.586006
Target:  5'- cGGCCagcaGCGCCGUggacacggcguccgGCgUCGAGUcGGUGCc -3'
miRNA:   3'- -CCGGc---UGCGGCA--------------CG-AGUUCGuCUACG- -5'
26600 3' -55.9 NC_005357.1 + 35344 0.66 0.633874
Target:  5'- uGGgCG-CGCCGUGggUAGGCcGcgGCg -3'
miRNA:   3'- -CCgGCuGCGGCACgaGUUCGuCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 4561 0.66 0.622716
Target:  5'- aGGCCGAaguCGCCGagGCgcu-GCucGGUGCg -3'
miRNA:   3'- -CCGGCU---GCGGCa-CGaguuCGu-CUACG- -5'
26600 3' -55.9 NC_005357.1 + 34654 0.66 0.622716
Target:  5'- gGGUgGACGCCG-GCgcagaUCGcGCcGGUGCu -3'
miRNA:   3'- -CCGgCUGCGGCaCG-----AGUuCGuCUACG- -5'
26600 3' -55.9 NC_005357.1 + 5358 0.66 0.600434
Target:  5'- uGG-CGACaGCCaacaUGCUCGA-CAGGUGCg -3'
miRNA:   3'- -CCgGCUG-CGGc---ACGAGUUcGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 35011 0.66 0.589331
Target:  5'- uGGCCGGCcauCCGgugcccgGCuUCAAGCuGGUGg -3'
miRNA:   3'- -CCGGCUGc--GGCa------CG-AGUUCGuCUACg -5'
26600 3' -55.9 NC_005357.1 + 15563 0.66 0.578264
Target:  5'- aGGUCaauGGCGCCGUcagugacgacGCgcu-GCGGAUGCa -3'
miRNA:   3'- -CCGG---CUGCGGCA----------CGaguuCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 9320 0.66 0.600434
Target:  5'- uGG-CGGCGCaCGUcgGCgcggCGGGCGGcgGCa -3'
miRNA:   3'- -CCgGCUGCG-GCA--CGa---GUUCGUCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 4512 0.66 0.611566
Target:  5'- cGGgCGGCGCCcgugaacguggcGUGCU-GGGCGGucGUGCc -3'
miRNA:   3'- -CCgGCUGCGG------------CACGAgUUCGUC--UACG- -5'
26600 3' -55.9 NC_005357.1 + 7283 0.66 0.633874
Target:  5'- uGGCCucGGgGCCGUaguGCUC--GCGGAUGg -3'
miRNA:   3'- -CCGG--CUgCGGCA---CGAGuuCGUCUACg -5'
26600 3' -55.9 NC_005357.1 + 19006 0.66 0.633874
Target:  5'- aGGCCGAUGUCccaCUUGuAGUGGGUGCg -3'
miRNA:   3'- -CCGGCUGCGGcacGAGU-UCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 4394 0.66 0.600434
Target:  5'- cGCCGucGCGCCGgGcCUUGAGCGuGcgGCa -3'
miRNA:   3'- cCGGC--UGCGGCaC-GAGUUCGU-CuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.