miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26600 3' -55.9 NC_005357.1 + 35702 1.15 0.000247
Target:  5'- aGGCCGACGCCGUGCUCAAGCAGAUGCg -3'
miRNA:   3'- -CCGGCUGCGGCACGAGUUCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 12303 0.75 0.192564
Target:  5'- aGGCCGGCGgCGUGUUCuGGC-GcgGCc -3'
miRNA:   3'- -CCGGCUGCgGCACGAGuUCGuCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 12214 0.74 0.203294
Target:  5'- cGCCGAgugcgUGCgCGUGCUCAAGCccGGcgGCu -3'
miRNA:   3'- cCGGCU-----GCG-GCACGAGUUCG--UCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 27848 0.74 0.203294
Target:  5'- cGGCCG-CGCCGcUGCUCAAGaacGUGUc -3'
miRNA:   3'- -CCGGCuGCGGC-ACGAGUUCgucUACG- -5'
26600 3' -55.9 NC_005357.1 + 143 0.74 0.226314
Target:  5'- cGGCgUGGCGCCaG-GCUuccccgCAGGCGGAUGCg -3'
miRNA:   3'- -CCG-GCUGCGG-CaCGA------GUUCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 37373 0.73 0.244998
Target:  5'- uGCCG-CgGCCuGUGCUCAAGCAGGacGCc -3'
miRNA:   3'- cCGGCuG-CGG-CACGAGUUCGUCUa-CG- -5'
26600 3' -55.9 NC_005357.1 + 8652 0.73 0.244998
Target:  5'- aGGCCG-CGCCGUaCUCGcuguguGCAGcgGCu -3'
miRNA:   3'- -CCGGCuGCGGCAcGAGUu-----CGUCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 35191 0.73 0.251504
Target:  5'- cGGCCGAcauCGCCGaggGUgagcgCGGcGCAGAUGCu -3'
miRNA:   3'- -CCGGCU---GCGGCa--CGa----GUU-CGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 25097 0.73 0.251504
Target:  5'- cGcCCGGCGCCGUGggauacAGCGGGUGCu -3'
miRNA:   3'- cC-GGCUGCGGCACgagu--UCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 31733 0.73 0.257482
Target:  5'- cGGCCGAgGCCGUGCgcgcugccgUCAAGacgcaacuggacaCGGcgGCg -3'
miRNA:   3'- -CCGGCUgCGGCACG---------AGUUC-------------GUCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 29540 0.73 0.258153
Target:  5'- uGGCCGcagaggacacccACGCCGUGCUCGGGguaucgcguCAGGUcgGCc -3'
miRNA:   3'- -CCGGC------------UGCGGCACGAGUUC---------GUCUA--CG- -5'
26600 3' -55.9 NC_005357.1 + 42016 0.72 0.27118
Target:  5'- cGGCCGAcgaucacCGCCGUGCUgCuGGUGGgcGCc -3'
miRNA:   3'- -CCGGCU-------GCGGCACGA-GuUCGUCuaCG- -5'
26600 3' -55.9 NC_005357.1 + 20894 0.72 0.27188
Target:  5'- uGCUGGgGCCgGUGCUUGAaCGGAUGCa -3'
miRNA:   3'- cCGGCUgCGG-CACGAGUUcGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 35086 0.72 0.278961
Target:  5'- aGGUCGAgGCCGcGCUCAAGgccAUGCg -3'
miRNA:   3'- -CCGGCUgCGGCaCGAGUUCgucUACG- -5'
26600 3' -55.9 NC_005357.1 + 34508 0.72 0.278961
Target:  5'- aGGUgGACGCCGaGCgcaaCGAGCAGcugGCg -3'
miRNA:   3'- -CCGgCUGCGGCaCGa---GUUCGUCua-CG- -5'
26600 3' -55.9 NC_005357.1 + 23560 0.72 0.278961
Target:  5'- cGGCCGAcauCGCCGgcagGUgCGGGCGGGggGCg -3'
miRNA:   3'- -CCGGCU---GCGGCa---CGaGUUCGUCUa-CG- -5'
26600 3' -55.9 NC_005357.1 + 11203 0.72 0.281834
Target:  5'- gGGCCGcGCGCCGggguucuucaUGCuuucgcccucgaccgUCAGGCAGAacgUGCg -3'
miRNA:   3'- -CCGGC-UGCGGC----------ACG---------------AGUUCGUCU---ACG- -5'
26600 3' -55.9 NC_005357.1 + 1329 0.72 0.293561
Target:  5'- aGGCCGACaagcgcgaggaaGCCGUGgUCG-GCGGccuUGCg -3'
miRNA:   3'- -CCGGCUG------------CGGCACgAGUuCGUCu--ACG- -5'
26600 3' -55.9 NC_005357.1 + 26899 0.71 0.31186
Target:  5'- aGGCCGGCaCCGUGCauaucggccugcccaUCAccGCAGAacUGCa -3'
miRNA:   3'- -CCGGCUGcGGCACG---------------AGUu-CGUCU--ACG- -5'
26600 3' -55.9 NC_005357.1 + 32589 0.71 0.332646
Target:  5'- cGCCGACGCUGUGaC-CAAGCuGGcccGCg -3'
miRNA:   3'- cCGGCUGCGGCAC-GaGUUCGuCUa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.