miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26600 3' -55.9 NC_005357.1 + 27247 0.69 0.412214
Target:  5'- aGCCGGCGCCccagGCUCuuGGCcGAgGCa -3'
miRNA:   3'- cCGGCUGCGGca--CGAGu-UCGuCUaCG- -5'
26600 3' -55.9 NC_005357.1 + 28156 0.71 0.35272
Target:  5'- uGCCGguggucagaucgaccACGCCGuUGCcCAcgcccAGCAGGUGCg -3'
miRNA:   3'- cCGGC---------------UGCGGC-ACGaGU-----UCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 13311 0.7 0.357871
Target:  5'- gGGCCGGCGuuGUaggcggcguagGCUUucGGCAGGUcGCc -3'
miRNA:   3'- -CCGGCUGCggCA-----------CGAGu-UCGUCUA-CG- -5'
26600 3' -55.9 NC_005357.1 + 15129 0.7 0.357871
Target:  5'- aGGcCCGACcCCaUGCUgGcGGCGGAUGCg -3'
miRNA:   3'- -CC-GGCUGcGGcACGAgU-UCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 28397 0.7 0.357871
Target:  5'- -uUCGACGCCGgcgGCgcggCGccAGUAGAUGCc -3'
miRNA:   3'- ccGGCUGCGGCa--CGa---GU--UCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 8127 0.7 0.375418
Target:  5'- cGGCCGGCGuuGguUGUgggCGuGCGGGUGUc -3'
miRNA:   3'- -CCGGCUGCggC--ACGa--GUuCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 28470 0.7 0.393537
Target:  5'- aGGCCGuCGCCGUaGUggUCGAGCAuccGCu -3'
miRNA:   3'- -CCGGCuGCGGCA-CG--AGUUCGUcuaCG- -5'
26600 3' -55.9 NC_005357.1 + 36266 0.7 0.393537
Target:  5'- cGGCCuGCGCUGggaagaugacgGCggCGAGUGGGUGCu -3'
miRNA:   3'- -CCGGcUGCGGCa----------CGa-GUUCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 14581 0.69 0.412214
Target:  5'- gGGCUGAUGCCGgcggccgauccGCUUuucAGCAG-UGCg -3'
miRNA:   3'- -CCGGCUGCGGCa----------CGAGu--UCGUCuACG- -5'
26600 3' -55.9 NC_005357.1 + 26348 0.71 0.349316
Target:  5'- uGGCCG-CGCC--GCUCGuaucGGCAGAuuuuUGCa -3'
miRNA:   3'- -CCGGCuGCGGcaCGAGU----UCGUCU----ACG- -5'
26600 3' -55.9 NC_005357.1 + 32589 0.71 0.332646
Target:  5'- cGCCGACGCUGUGaC-CAAGCuGGcccGCg -3'
miRNA:   3'- cCGGCUGCGGCAC-GaGUUCGuCUa--CG- -5'
26600 3' -55.9 NC_005357.1 + 1329 0.72 0.293561
Target:  5'- aGGCCGACaagcgcgaggaaGCCGUGgUCG-GCGGccuUGCg -3'
miRNA:   3'- -CCGGCUG------------CGGCACgAGUuCGUCu--ACG- -5'
26600 3' -55.9 NC_005357.1 + 27848 0.74 0.203294
Target:  5'- cGGCCG-CGCCGcUGCUCAAGaacGUGUc -3'
miRNA:   3'- -CCGGCuGCGGC-ACGAGUUCgucUACG- -5'
26600 3' -55.9 NC_005357.1 + 143 0.74 0.226314
Target:  5'- cGGCgUGGCGCCaG-GCUuccccgCAGGCGGAUGCg -3'
miRNA:   3'- -CCG-GCUGCGG-CaCGA------GUUCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 37373 0.73 0.244998
Target:  5'- uGCCG-CgGCCuGUGCUCAAGCAGGacGCc -3'
miRNA:   3'- cCGGCuG-CGG-CACGAGUUCGUCUa-CG- -5'
26600 3' -55.9 NC_005357.1 + 25097 0.73 0.251504
Target:  5'- cGcCCGGCGCCGUGggauacAGCGGGUGCu -3'
miRNA:   3'- cC-GGCUGCGGCACgagu--UCGUCUACG- -5'
26600 3' -55.9 NC_005357.1 + 29540 0.73 0.258153
Target:  5'- uGGCCGcagaggacacccACGCCGUGCUCGGGguaucgcguCAGGUcgGCc -3'
miRNA:   3'- -CCGGC------------UGCGGCACGAGUUC---------GUCUA--CG- -5'
26600 3' -55.9 NC_005357.1 + 23560 0.72 0.278961
Target:  5'- cGGCCGAcauCGCCGgcagGUgCGGGCGGGggGCg -3'
miRNA:   3'- -CCGGCU---GCGGCa---CGaGUUCGUCUa-CG- -5'
26600 3' -55.9 NC_005357.1 + 34508 0.72 0.278961
Target:  5'- aGGUgGACGCCGaGCgcaaCGAGCAGcugGCg -3'
miRNA:   3'- -CCGgCUGCGGCaCGa---GUUCGUCua-CG- -5'
26600 3' -55.9 NC_005357.1 + 35086 0.72 0.278961
Target:  5'- aGGUCGAgGCCGcGCUCAAGgccAUGCg -3'
miRNA:   3'- -CCGGCUgCGGCaCGAGUUCgucUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.