miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26603 3' -60.8 NC_005357.1 + 36136 1.12 0.00014
Target:  5'- aCCGGAGAUAAGCCCCGGCGCCCCAGCc -3'
miRNA:   3'- -GGCCUCUAUUCGGGGCCGCGGGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 17269 0.76 0.075518
Target:  5'- gCCGGGGAUAuuGCCguccacgaagCCGGCGCCgCgGGCg -3'
miRNA:   3'- -GGCCUCUAUu-CGG----------GGCCGCGG-GgUCG- -5'
26603 3' -60.8 NC_005357.1 + 27439 0.74 0.108404
Target:  5'- cCCGGcGGccgcAGGCCCUGGCGCUgguaugCCAGCg -3'
miRNA:   3'- -GGCCuCUa---UUCGGGGCCGCGG------GGUCG- -5'
26603 3' -60.8 NC_005357.1 + 12335 0.73 0.124328
Target:  5'- gCCuGGGAcaaGGGCCgUGGCGCCCgGGCg -3'
miRNA:   3'- -GGcCUCUa--UUCGGgGCCGCGGGgUCG- -5'
26603 3' -60.8 NC_005357.1 + 36655 0.72 0.14629
Target:  5'- gCGGGacacGAUGgucaaGGCCCUGGCGCacucgcugCCCGGCg -3'
miRNA:   3'- gGCCU----CUAU-----UCGGGGCCGCG--------GGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 32362 0.72 0.15354
Target:  5'- gCGGucgccgccgAGGCCCCGGC-CgCCCAGCa -3'
miRNA:   3'- gGCCucua-----UUCGGGGCCGcG-GGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 6739 0.7 0.201064
Target:  5'- aCGGcGuc-GGCCuuGGCGCCCCAc- -3'
miRNA:   3'- gGCCuCuauUCGGggCCGCGGGGUcg -5'
26603 3' -60.8 NC_005357.1 + 7771 0.7 0.216743
Target:  5'- aCCGGcgcGAUcuGCgCCGGCGUccacccuucgccgCCCAGCa -3'
miRNA:   3'- -GGCCu--CUAuuCGgGGCCGCG-------------GGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 33680 0.7 0.222959
Target:  5'- gCGGcacGUGAauacgcgcgcGCCCUGGUGUCCCGGCu -3'
miRNA:   3'- gGCCuc-UAUU----------CGGGGCCGCGGGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 35351 0.69 0.228741
Target:  5'- gCCGuGGGUAGGCCgCGGCGUcaugaaguaCCUGGCc -3'
miRNA:   3'- -GGCcUCUAUUCGGgGCCGCG---------GGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 24343 0.69 0.251875
Target:  5'- cCUGGuucgcgccGGCUUCGGCGgCCCAGCa -3'
miRNA:   3'- -GGCCucuau---UCGGGGCCGCgGGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 3741 0.68 0.279649
Target:  5'- gCCGGuGGUGGGCacgUCGGUGCCgCC-GCu -3'
miRNA:   3'- -GGCCuCUAUUCGg--GGCCGCGG-GGuCG- -5'
26603 3' -60.8 NC_005357.1 + 25129 0.68 0.286611
Target:  5'- gCCGGAaugGAUGcgcGCCCgCGGCGCCggcuucguggaCGGCa -3'
miRNA:   3'- -GGCCU---CUAUu--CGGG-GCCGCGGg----------GUCG- -5'
26603 3' -60.8 NC_005357.1 + 30066 0.67 0.312802
Target:  5'- gCCGGAaAUAuccuuugugcggcGCCCgGGCGCCaCGGCc -3'
miRNA:   3'- -GGCCUcUAUu------------CGGGgCCGCGGgGUCG- -5'
26603 3' -60.8 NC_005357.1 + 2727 0.67 0.323466
Target:  5'- gCCGGAcgcuUGAGCgcggCCCGGCGCUgCucgGGCg -3'
miRNA:   3'- -GGCCUcu--AUUCG----GGGCCGCGGgG---UCG- -5'
26603 3' -60.8 NC_005357.1 + 167 0.67 0.323466
Target:  5'- -aGGcGGAUGcGCCCCGGUGUCgCugGGCa -3'
miRNA:   3'- ggCC-UCUAUuCGGGGCCGCGGgG--UCG- -5'
26603 3' -60.8 NC_005357.1 + 8869 0.67 0.331249
Target:  5'- aCGGugcGGUAgcguucGGCCuuGGCGUCCCAc- -3'
miRNA:   3'- gGCCu--CUAU------UCGGggCCGCGGGGUcg -5'
26603 3' -60.8 NC_005357.1 + 36057 0.67 0.347223
Target:  5'- gCCGaccuGGUGuaaCCCaGCGCCCCGGCc -3'
miRNA:   3'- -GGCcu--CUAUucgGGGcCGCGGGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 34744 0.66 0.362902
Target:  5'- gCCGccGAGGUcAAGCCCgacgaccUGGC-CCCCGGUg -3'
miRNA:   3'- -GGC--CUCUA-UUCGGG-------GCCGcGGGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 19032 0.66 0.363741
Target:  5'- gCGGu----AGCCCUGGUagcgGCCgCCGGCg -3'
miRNA:   3'- gGCCucuauUCGGGGCCG----CGG-GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.