Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26603 | 3' | -60.8 | NC_005357.1 | + | 167 | 0.67 | 0.323466 |
Target: 5'- -aGGcGGAUGcGCCCCGGUGUCgCugGGCa -3' miRNA: 3'- ggCC-UCUAUuCGGGGCCGCGGgG--UCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 2727 | 0.67 | 0.323466 |
Target: 5'- gCCGGAcgcuUGAGCgcggCCCGGCGCUgCucgGGCg -3' miRNA: 3'- -GGCCUcu--AUUCG----GGGCCGCGGgG---UCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 3741 | 0.68 | 0.279649 |
Target: 5'- gCCGGuGGUGGGCacgUCGGUGCCgCC-GCu -3' miRNA: 3'- -GGCCuCUAUUCGg--GGCCGCGG-GGuCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 6739 | 0.7 | 0.201064 |
Target: 5'- aCGGcGuc-GGCCuuGGCGCCCCAc- -3' miRNA: 3'- gGCCuCuauUCGGggCCGCGGGGUcg -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 7771 | 0.7 | 0.216743 |
Target: 5'- aCCGGcgcGAUcuGCgCCGGCGUccacccuucgccgCCCAGCa -3' miRNA: 3'- -GGCCu--CUAuuCGgGGCCGCG-------------GGGUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 8869 | 0.67 | 0.331249 |
Target: 5'- aCGGugcGGUAgcguucGGCCuuGGCGUCCCAc- -3' miRNA: 3'- gGCCu--CUAU------UCGGggCCGCGGGGUcg -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 10060 | 0.66 | 0.363741 |
Target: 5'- gCUGGGcGGccgGGGCCUCGGCGgcgaCCgCAGCg -3' miRNA: 3'- -GGCCU-CUa--UUCGGGGCCGCg---GG-GUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 12335 | 0.73 | 0.124328 |
Target: 5'- gCCuGGGAcaaGGGCCgUGGCGCCCgGGCg -3' miRNA: 3'- -GGcCUCUa--UUCGGgGCCGCGGGgUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 12810 | 0.66 | 0.380795 |
Target: 5'- cCCGGccacAAGCgCCCGGCGCUggacaaCUGGCa -3' miRNA: 3'- -GGCCucuaUUCG-GGGCCGCGG------GGUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 13068 | 0.66 | 0.367109 |
Target: 5'- gCUGGGGcaAGGCCaCCGGCGCgUgguucgaggacuuggCCGGCg -3' miRNA: 3'- -GGCCUCuaUUCGG-GGCCGCG-G---------------GGUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 13343 | 0.66 | 0.398376 |
Target: 5'- aCGGGccUGA-CCUCGGCGCCCgAGg -3' miRNA: 3'- gGCCUcuAUUcGGGGCCGCGGGgUCg -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 15939 | 0.66 | 0.389521 |
Target: 5'- ----cGAUAGGCUgCGGCGCCUUcGCg -3' miRNA: 3'- ggccuCUAUUCGGgGCCGCGGGGuCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 17269 | 0.76 | 0.075518 |
Target: 5'- gCCGGGGAUAuuGCCguccacgaagCCGGCGCCgCgGGCg -3' miRNA: 3'- -GGCCUCUAUu-CGG----------GGCCGCGG-GgUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 19032 | 0.66 | 0.363741 |
Target: 5'- gCGGu----AGCCCUGGUagcgGCCgCCGGCg -3' miRNA: 3'- gGCCucuauUCGGGGCCG----CGG-GGUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 24343 | 0.69 | 0.251875 |
Target: 5'- cCUGGuucgcgccGGCUUCGGCGgCCCAGCa -3' miRNA: 3'- -GGCCucuau---UCGGGGCCGCgGGGUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 25129 | 0.68 | 0.286611 |
Target: 5'- gCCGGAaugGAUGcgcGCCCgCGGCGCCggcuucguggaCGGCa -3' miRNA: 3'- -GGCCU---CUAUu--CGGG-GCCGCGGg----------GUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 27439 | 0.74 | 0.108404 |
Target: 5'- cCCGGcGGccgcAGGCCCUGGCGCUgguaugCCAGCg -3' miRNA: 3'- -GGCCuCUa---UUCGGGGCCGCGG------GGUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 30066 | 0.67 | 0.312802 |
Target: 5'- gCCGGAaAUAuccuuugugcggcGCCCgGGCGCCaCGGCc -3' miRNA: 3'- -GGCCUcUAUu------------CGGGgCCGCGGgGUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 31208 | 0.66 | 0.386015 |
Target: 5'- aCGGucGAgggcgaaagcaugAAGaaCCCCGGCGCgcggCCCAGCu -3' miRNA: 3'- gGCCu-CUa------------UUC--GGGGCCGCG----GGGUCG- -5' |
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26603 | 3' | -60.8 | NC_005357.1 | + | 32362 | 0.72 | 0.15354 |
Target: 5'- gCGGucgccgccgAGGCCCCGGC-CgCCCAGCa -3' miRNA: 3'- gGCCucua-----UUCGGGGCCGcG-GGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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