miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26603 3' -60.8 NC_005357.1 + 6739 0.7 0.201064
Target:  5'- aCGGcGuc-GGCCuuGGCGCCCCAc- -3'
miRNA:   3'- gGCCuCuauUCGGggCCGCGGGGUcg -5'
26603 3' -60.8 NC_005357.1 + 32362 0.72 0.15354
Target:  5'- gCGGucgccgccgAGGCCCCGGC-CgCCCAGCa -3'
miRNA:   3'- gGCCucua-----UUCGGGGCCGcG-GGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 36655 0.72 0.14629
Target:  5'- gCGGGacacGAUGgucaaGGCCCUGGCGCacucgcugCCCGGCg -3'
miRNA:   3'- gGCCU----CUAU-----UCGGGGCCGCG--------GGGUCG- -5'
26603 3' -60.8 NC_005357.1 + 12335 0.73 0.124328
Target:  5'- gCCuGGGAcaaGGGCCgUGGCGCCCgGGCg -3'
miRNA:   3'- -GGcCUCUa--UUCGGgGCCGCGGGgUCG- -5'
26603 3' -60.8 NC_005357.1 + 27439 0.74 0.108404
Target:  5'- cCCGGcGGccgcAGGCCCUGGCGCUgguaugCCAGCg -3'
miRNA:   3'- -GGCCuCUa---UUCGGGGCCGCGG------GGUCG- -5'
26603 3' -60.8 NC_005357.1 + 17269 0.76 0.075518
Target:  5'- gCCGGGGAUAuuGCCguccacgaagCCGGCGCCgCgGGCg -3'
miRNA:   3'- -GGCCUCUAUu-CGG----------GGCCGCGG-GgUCG- -5'
26603 3' -60.8 NC_005357.1 + 36136 1.12 0.00014
Target:  5'- aCCGGAGAUAAGCCCCGGCGCCCCAGCc -3'
miRNA:   3'- -GGCCUCUAUUCGGGGCCGCGGGGUCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.