miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26603 5' -52.9 NC_005357.1 + 15601 0.68 0.645082
Target:  5'- cCAUCGGGGCGGCGCa---GCCUGCc -3'
miRNA:   3'- uGUGGCUCUGUUGCGguacUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 16004 0.67 0.700734
Target:  5'- cGCGCaGGGACAGguCGCCGgugacgaaaccguUGGCCUGCc -3'
miRNA:   3'- -UGUGgCUCUGUU--GCGGU-------------ACUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 17122 0.66 0.767413
Target:  5'- aGCGCCGGuGGCAGgGCCGgccgcacGACCUcaagGCa -3'
miRNA:   3'- -UGUGGCU-CUGUUgCGGUa------CUGGA----UGa -5'
26603 5' -52.9 NC_005357.1 + 17453 0.76 0.231704
Target:  5'- aGCAUCGAGGCcaggugccACGCCAgGGCCUGCa -3'
miRNA:   3'- -UGUGGCUCUGu-------UGCGGUaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 17849 0.67 0.690598
Target:  5'- cACGCCG-GACGGCccgaCCGUGGCCgGCc -3'
miRNA:   3'- -UGUGGCuCUGUUGc---GGUACUGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 18709 0.67 0.67928
Target:  5'- cCACCGAGGCAcugGC-CCGcGACCUGg- -3'
miRNA:   3'- uGUGGCUCUGU---UGcGGUaCUGGAUga -5'
26603 5' -52.9 NC_005357.1 + 19224 0.67 0.711926
Target:  5'- -gGCCGAauucaccGACGAgGCC--GACCUGCUg -3'
miRNA:   3'- ugUGGCU-------CUGUUgCGGuaCUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 23046 0.68 0.610768
Target:  5'- uACGCCGAagugGACAAgGCCcUGGCCgACc -3'
miRNA:   3'- -UGUGGCU----CUGUUgCGGuACUGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 23468 0.67 0.689469
Target:  5'- cACGCCGGcGugGaacagguGCGCCGUgggaaucucGACCUGCg -3'
miRNA:   3'- -UGUGGCU-CugU-------UGCGGUA---------CUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 24466 0.66 0.746025
Target:  5'- gACGCCGAcGACc-UGCUgcuUGGCCUGCg -3'
miRNA:   3'- -UGUGGCU-CUGuuGCGGu--ACUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 25491 0.81 0.117449
Target:  5'- cACGCUGcuGGACGGCGCCGUGcCCUACg -3'
miRNA:   3'- -UGUGGC--UCUGUUGCGGUACuGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 26001 0.68 0.645082
Target:  5'- aACGCCGccGGCGAUuaccccgcgGCCGUGuCCUACUu -3'
miRNA:   3'- -UGUGGCu-CUGUUG---------CGGUACuGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 26364 0.68 0.667913
Target:  5'- gGCGCCGcGcGCGGCgGCCAcgugcgcgaacUGGCCUACa -3'
miRNA:   3'- -UGUGGCuC-UGUUG-CGGU-----------ACUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 26862 0.69 0.599355
Target:  5'- cGCGUCGucacuGACGGCGCCAUuGACCUGg- -3'
miRNA:   3'- -UGUGGCu----CUGUUGCGGUA-CUGGAUga -5'
26603 5' -52.9 NC_005357.1 + 27583 0.69 0.565338
Target:  5'- gGCACCGgcagcAGGCGGCGCCAgaUGGCgUGg- -3'
miRNA:   3'- -UGUGGC-----UCUGUUGCGGU--ACUGgAUga -5'
26603 5' -52.9 NC_005357.1 + 28787 0.67 0.71304
Target:  5'- gACAUgGAcGGCcGCGCCG-GACUUGCUg -3'
miRNA:   3'- -UGUGgCU-CUGuUGCGGUaCUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 28980 0.66 0.746025
Target:  5'- cGCGCCcGAGGC--CGCCAagcuggcgGGCCUGCc -3'
miRNA:   3'- -UGUGG-CUCUGuuGCGGUa-------CUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 29090 0.67 0.701856
Target:  5'- gGCGCCGAGGuCAG-GCCcgugcggGACUUGCUg -3'
miRNA:   3'- -UGUGGCUCU-GUUgCGGua-----CUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 30126 0.67 0.690598
Target:  5'- cGCGCC-AGAacACGCCGccGGCCUGCa -3'
miRNA:   3'- -UGUGGcUCUguUGCGGUa-CUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 31425 0.67 0.71304
Target:  5'- cCAUCaacGGCGACGCCAcGAUCUGCg -3'
miRNA:   3'- uGUGGcu-CUGUUGCGGUaCUGGAUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.