miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26603 5' -52.9 NC_005357.1 + 11499 0.72 0.436526
Target:  5'- gACACCGcaaaGGGCAGCGCCugcgcuggcGUGAggcCCUGCg -3'
miRNA:   3'- -UGUGGC----UCUGUUGCGG---------UACU---GGAUGa -5'
26603 5' -52.9 NC_005357.1 + 37419 0.7 0.520835
Target:  5'- gGCGCUGAaagcgGACuGCGCC--GACCUGCUg -3'
miRNA:   3'- -UGUGGCU-----CUGuUGCGGuaCUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 27583 0.69 0.565338
Target:  5'- gGCACCGgcagcAGGCGGCGCCAgaUGGCgUGg- -3'
miRNA:   3'- -UGUGGC-----UCUGUUGCGGU--ACUGgAUga -5'
26603 5' -52.9 NC_005357.1 + 37861 0.69 0.576631
Target:  5'- cGCACCGAG-CAGCGCCucggcGACUUcgGCc -3'
miRNA:   3'- -UGUGGCUCuGUUGCGGua---CUGGA--UGa -5'
26603 5' -52.9 NC_005357.1 + 32584 0.68 0.633642
Target:  5'- gACACCGc--CGACGCUGUGACCaaGCUg -3'
miRNA:   3'- -UGUGGCucuGUUGCGGUACUGGa-UGA- -5'
26603 5' -52.9 NC_005357.1 + 34426 0.68 0.667913
Target:  5'- gGCGCCaaGGGCAcguccgACGCCGUgGugCUGCUg -3'
miRNA:   3'- -UGUGGc-UCUGU------UGCGGUA-CugGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 23046 0.68 0.610768
Target:  5'- uACGCCGAagugGACAAgGCCcUGGCCgACc -3'
miRNA:   3'- -UGUGGCU----CUGUUgCGGuACUGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 37120 0.68 0.6222
Target:  5'- -gGCCGGcGACcuggaaaauaucGACGCCGUGGCCgACa -3'
miRNA:   3'- ugUGGCU-CUG------------UUGCGGUACUGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 5753 0.68 0.633642
Target:  5'- cGCGCCGGGcaGCGaguGCGCCAgGGCCUugACc -3'
miRNA:   3'- -UGUGGCUC--UGU---UGCGGUaCUGGA--UGa -5'
26603 5' -52.9 NC_005357.1 + 14609 0.68 0.645082
Target:  5'- cCACCGcGGGCAGCGCgCGcgagGACgUGCUg -3'
miRNA:   3'- uGUGGC-UCUGUUGCG-GUa---CUGgAUGA- -5'
26603 5' -52.9 NC_005357.1 + 15601 0.68 0.645082
Target:  5'- cCAUCGGGGCGGCGCa---GCCUGCc -3'
miRNA:   3'- uGUGGCUCUGUUGCGguacUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 26001 0.68 0.645082
Target:  5'- aACGCCGccGGCGAUuaccccgcgGCCGUGuCCUACUu -3'
miRNA:   3'- -UGUGGCu-CUGUUG---------CGGUACuGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 26862 0.69 0.599355
Target:  5'- cGCGUCGucacuGACGGCGCCAUuGACCUGg- -3'
miRNA:   3'- -UGUGGCu----CUGUUGCGGUA-CUGGAUga -5'
26603 5' -52.9 NC_005357.1 + 41792 0.69 0.576631
Target:  5'- gGCACCGAcucGACGccggACGCCGUGuCCacgGCg -3'
miRNA:   3'- -UGUGGCU---CUGU----UGCGGUACuGGa--UGa -5'
26603 5' -52.9 NC_005357.1 + 14468 0.69 0.576631
Target:  5'- cCACCGAgGACGugcuCGCCAUccCCUACg -3'
miRNA:   3'- uGUGGCU-CUGUu---GCGGUAcuGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 835 0.71 0.446646
Target:  5'- cGCGCaGAGACAGCGagccgaCCGUGGCCUGu- -3'
miRNA:   3'- -UGUGgCUCUGUUGC------GGUACUGGAUga -5'
26603 5' -52.9 NC_005357.1 + 14975 0.71 0.446646
Target:  5'- cGCGCUGGcauacCAGCGCCAgGGCCUGCg -3'
miRNA:   3'- -UGUGGCUcu---GUUGCGGUaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 1747 0.72 0.40698
Target:  5'- aACACCGGGcgguCAugGCC--GGCCUGCg -3'
miRNA:   3'- -UGUGGCUCu---GUugCGGuaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 37673 0.72 0.387992
Target:  5'- aACGCCGAGaACAucGCgGCCGUGGCCg--- -3'
miRNA:   3'- -UGUGGCUC-UGU--UG-CGGUACUGGauga -5'
26603 5' -52.9 NC_005357.1 + 14390 0.66 0.777887
Target:  5'- uCGCCGAcguguucuucGGCGACGCCGacaUGAUCgGCUu -3'
miRNA:   3'- uGUGGCU----------CUGUUGCGGU---ACUGGaUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.