miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26603 5' -52.9 NC_005357.1 + 31425 0.67 0.71304
Target:  5'- cCAUCaacGGCGACGCCAcGAUCUGCg -3'
miRNA:   3'- uGUGGcu-CUGUUGCGGUaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 39688 0.68 0.667913
Target:  5'- cACGcCCGAG-CAGCGCCG-GGCCgcGCUc -3'
miRNA:   3'- -UGU-GGCUCuGUUGCGGUaCUGGa-UGA- -5'
26603 5' -52.9 NC_005357.1 + 13290 0.68 0.667913
Target:  5'- aGCGCCGAuuGCAgcGCGCCggGGCCgGCg -3'
miRNA:   3'- -UGUGGCUc-UGU--UGCGGuaCUGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 23468 0.67 0.689469
Target:  5'- cACGCCGGcGugGaacagguGCGCCGUgggaaucucGACCUGCg -3'
miRNA:   3'- -UGUGGCU-CugU-------UGCGGUA---------CUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 9187 0.67 0.690598
Target:  5'- gGCGCCGu--CGACGU--UGGCCUGCUc -3'
miRNA:   3'- -UGUGGCucuGUUGCGguACUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 30126 0.67 0.690598
Target:  5'- cGCGCC-AGAacACGCCGccGGCCUGCa -3'
miRNA:   3'- -UGUGGcUCUguUGCGGUa-CUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 16004 0.67 0.700734
Target:  5'- cGCGCaGGGACAGguCGCCGgugacgaaaccguUGGCCUGCc -3'
miRNA:   3'- -UGUGgCUCUGUU--GCGGU-------------ACUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 4685 0.67 0.701856
Target:  5'- cGCGCCG-GAUAGCGCggcgagaAUGGCCgGCa -3'
miRNA:   3'- -UGUGGCuCUGUUGCGg------UACUGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 29090 0.67 0.701856
Target:  5'- gGCGCCGAGGuCAG-GCCcgugcggGACUUGCUg -3'
miRNA:   3'- -UGUGGCUCU-GUUgCGGua-----CUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 34426 0.68 0.667913
Target:  5'- gGCGCCaaGGGCAcguccgACGCCGUgGugCUGCUg -3'
miRNA:   3'- -UGUGGc-UCUGU------UGCGGUA-CugGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 32584 0.68 0.633642
Target:  5'- gACACCGc--CGACGCUGUGACCaaGCUg -3'
miRNA:   3'- -UGUGGCucuGUUGCGGUACUGGa-UGA- -5'
26603 5' -52.9 NC_005357.1 + 37861 0.69 0.576631
Target:  5'- cGCACCGAG-CAGCGCCucggcGACUUcgGCc -3'
miRNA:   3'- -UGUGGCUCuGUUGCGGua---CUGGA--UGa -5'
26603 5' -52.9 NC_005357.1 + 17453 0.76 0.231704
Target:  5'- aGCAUCGAGGCcaggugccACGCCAgGGCCUGCa -3'
miRNA:   3'- -UGUGGCUCUGu-------UGCGGUaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 7055 0.75 0.267864
Target:  5'- cCACCGGGGCGgccagguacuucaugACGCCGcGGCCUACc -3'
miRNA:   3'- uGUGGCUCUGU---------------UGCGGUaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 34912 0.73 0.369596
Target:  5'- cGCACgGuAGACAACGCCAccucgGcaACCUGCUg -3'
miRNA:   3'- -UGUGgC-UCUGUUGCGGUa----C--UGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 7198 0.73 0.378719
Target:  5'- -aGCCGGGACAGCGCgAUGuCCacgGCa -3'
miRNA:   3'- ugUGGCUCUGUUGCGgUACuGGa--UGa -5'
26603 5' -52.9 NC_005357.1 + 36928 0.72 0.397413
Target:  5'- gGCACCGAGuuGGCGCUAUGGCa---- -3'
miRNA:   3'- -UGUGGCUCugUUGCGGUACUGgauga -5'
26603 5' -52.9 NC_005357.1 + 11499 0.72 0.436526
Target:  5'- gACACCGcaaaGGGCAGCGCCugcgcuggcGUGAggcCCUGCg -3'
miRNA:   3'- -UGUGGC----UCUGUUGCGG---------UACU---GGAUGa -5'
26603 5' -52.9 NC_005357.1 + 37419 0.7 0.520835
Target:  5'- gGCGCUGAaagcgGACuGCGCC--GACCUGCUg -3'
miRNA:   3'- -UGUGGCU-----CUGuUGCGGuaCUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 27583 0.69 0.565338
Target:  5'- gGCACCGgcagcAGGCGGCGCCAgaUGGCgUGg- -3'
miRNA:   3'- -UGUGGC-----UCUGUUGCGGU--ACUGgAUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.