Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26603 | 5' | -52.9 | NC_005357.1 | + | 835 | 0.71 | 0.446646 |
Target: 5'- cGCGCaGAGACAGCGagccgaCCGUGGCCUGu- -3' miRNA: 3'- -UGUGgCUCUGUUGC------GGUACUGGAUga -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 1747 | 0.72 | 0.40698 |
Target: 5'- aACACCGGGcgguCAugGCC--GGCCUGCg -3' miRNA: 3'- -UGUGGCUCu---GUugCGGuaCUGGAUGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 4570 | 0.68 | 0.667913 |
Target: 5'- uCGCCGAGGCGcugcucgguGCGCCAggcgagGAaCUGCUc -3' miRNA: 3'- uGUGGCUCUGU---------UGCGGUa-----CUgGAUGA- -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 4685 | 0.67 | 0.701856 |
Target: 5'- cGCGCCG-GAUAGCGCggcgagaAUGGCCgGCa -3' miRNA: 3'- -UGUGGCuCUGUUGCGg------UACUGGaUGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 5753 | 0.68 | 0.633642 |
Target: 5'- cGCGCCGGGcaGCGaguGCGCCAgGGCCUugACc -3' miRNA: 3'- -UGUGGCUC--UGU---UGCGGUaCUGGA--UGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 7055 | 0.75 | 0.267864 |
Target: 5'- cCACCGGGGCGgccagguacuucaugACGCCGcGGCCUACc -3' miRNA: 3'- uGUGGCUCUGU---------------UGCGGUaCUGGAUGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 7198 | 0.73 | 0.378719 |
Target: 5'- -aGCCGGGACAGCGCgAUGuCCacgGCa -3' miRNA: 3'- ugUGGCUCUGUUGCGgUACuGGa--UGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 7627 | 0.68 | 0.667913 |
Target: 5'- aGCGCCGGacACGugGCCuUGGCCUuGCa -3' miRNA: 3'- -UGUGGCUc-UGUugCGGuACUGGA-UGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 7933 | 0.66 | 0.766357 |
Target: 5'- aACACCGGcgcgaggauuuccGACAGCuugcCCGUGGCCUcgGCg -3' miRNA: 3'- -UGUGGCU-------------CUGUUGc---GGUACUGGA--UGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 8444 | 0.66 | 0.756788 |
Target: 5'- aACAUCGGcGCGAUGUCGgcgucgaggUGGCCUGCg -3' miRNA: 3'- -UGUGGCUcUGUUGCGGU---------ACUGGAUGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 9187 | 0.67 | 0.690598 |
Target: 5'- gGCGCCGu--CGACGU--UGGCCUGCUc -3' miRNA: 3'- -UGUGGCucuGUUGCGguACUGGAUGA- -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 11499 | 0.72 | 0.436526 |
Target: 5'- gACACCGcaaaGGGCAGCGCCugcgcuggcGUGAggcCCUGCg -3' miRNA: 3'- -UGUGGC----UCUGUUGCGG---------UACU---GGAUGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 13290 | 0.68 | 0.667913 |
Target: 5'- aGCGCCGAuuGCAgcGCGCCggGGCCgGCg -3' miRNA: 3'- -UGUGGCUc-UGU--UGCGGuaCUGGaUGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 13685 | 0.66 | 0.756788 |
Target: 5'- cGCACCGcgcuGGACGAUGCCAaGGCgCU-Ca -3' miRNA: 3'- -UGUGGC----UCUGUUGCGGUaCUG-GAuGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 14229 | 0.66 | 0.756788 |
Target: 5'- -gGCCGAccugGACAagGCGCCGc-ACCUGCUg -3' miRNA: 3'- ugUGGCU----CUGU--UGCGGUacUGGAUGA- -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 14390 | 0.66 | 0.777887 |
Target: 5'- uCGCCGAcguguucuucGGCGACGCCGacaUGAUCgGCUu -3' miRNA: 3'- uGUGGCU----------CUGUUGCGGU---ACUGGaUGA- -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 14468 | 0.69 | 0.576631 |
Target: 5'- cCACCGAgGACGugcuCGCCAUccCCUACg -3' miRNA: 3'- uGUGGCU-CUGUu---GCGGUAcuGGAUGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 14609 | 0.68 | 0.645082 |
Target: 5'- cCACCGcGGGCAGCGCgCGcgagGACgUGCUg -3' miRNA: 3'- uGUGGC-UCUGUUGCG-GUa---CUGgAUGA- -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 14920 | 0.66 | 0.735138 |
Target: 5'- cGCGCCGAGAagcuGGCgGCCGaGGCCgccgGCa -3' miRNA: 3'- -UGUGGCUCUg---UUG-CGGUaCUGGa---UGa -5' |
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26603 | 5' | -52.9 | NC_005357.1 | + | 14975 | 0.71 | 0.446646 |
Target: 5'- cGCGCUGGcauacCAGCGCCAgGGCCUGCg -3' miRNA: 3'- -UGUGGCUcu---GUUGCGGUaCUGGAUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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