miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26603 5' -52.9 NC_005357.1 + 36172 1.07 0.001654
Target:  5'- cACACCGAGACAACGCCAUGACCUACUu -3'
miRNA:   3'- -UGUGGCUCUGUUGCGGUACUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 25491 0.81 0.117449
Target:  5'- cACGCUGcuGGACGGCGCCGUGcCCUACg -3'
miRNA:   3'- -UGUGGC--UCUGUUGCGGUACuGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 17453 0.76 0.231704
Target:  5'- aGCAUCGAGGCcaggugccACGCCAgGGCCUGCa -3'
miRNA:   3'- -UGUGGCUCUGu-------UGCGGUaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 7055 0.75 0.267864
Target:  5'- cCACCGGGGCGgccagguacuucaugACGCCGcGGCCUACc -3'
miRNA:   3'- uGUGGCUCUGU---------------UGCGGUaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 34912 0.73 0.369596
Target:  5'- cGCACgGuAGACAACGCCAccucgGcaACCUGCUg -3'
miRNA:   3'- -UGUGgC-UCUGUUGCGGUa----C--UGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 7198 0.73 0.378719
Target:  5'- -aGCCGGGACAGCGCgAUGuCCacgGCa -3'
miRNA:   3'- ugUGGCUCUGUUGCGgUACuGGa--UGa -5'
26603 5' -52.9 NC_005357.1 + 37673 0.72 0.387992
Target:  5'- aACGCCGAGaACAucGCgGCCGUGGCCg--- -3'
miRNA:   3'- -UGUGGCUC-UGU--UG-CGGUACUGGauga -5'
26603 5' -52.9 NC_005357.1 + 36928 0.72 0.397413
Target:  5'- gGCACCGAGuuGGCGCUAUGGCa---- -3'
miRNA:   3'- -UGUGGCUCugUUGCGGUACUGgauga -5'
26603 5' -52.9 NC_005357.1 + 1747 0.72 0.40698
Target:  5'- aACACCGGGcgguCAugGCC--GGCCUGCg -3'
miRNA:   3'- -UGUGGCUCu---GUugCGGuaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 11499 0.72 0.436526
Target:  5'- gACACCGcaaaGGGCAGCGCCugcgcuggcGUGAggcCCUGCg -3'
miRNA:   3'- -UGUGGC----UCUGUUGCGG---------UACU---GGAUGa -5'
26603 5' -52.9 NC_005357.1 + 835 0.71 0.446646
Target:  5'- cGCGCaGAGACAGCGagccgaCCGUGGCCUGu- -3'
miRNA:   3'- -UGUGgCUCUGUUGC------GGUACUGGAUga -5'
26603 5' -52.9 NC_005357.1 + 14975 0.71 0.446646
Target:  5'- cGCGCUGGcauacCAGCGCCAgGGCCUGCg -3'
miRNA:   3'- -UGUGGCUcu---GUUGCGGUaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 37419 0.7 0.520835
Target:  5'- gGCGCUGAaagcgGACuGCGCC--GACCUGCUg -3'
miRNA:   3'- -UGUGGCU-----CUGuUGCGGuaCUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 27583 0.69 0.565338
Target:  5'- gGCACCGgcagcAGGCGGCGCCAgaUGGCgUGg- -3'
miRNA:   3'- -UGUGGC-----UCUGUUGCGGU--ACUGgAUga -5'
26603 5' -52.9 NC_005357.1 + 41792 0.69 0.576631
Target:  5'- gGCACCGAcucGACGccggACGCCGUGuCCacgGCg -3'
miRNA:   3'- -UGUGGCU---CUGU----UGCGGUACuGGa--UGa -5'
26603 5' -52.9 NC_005357.1 + 37861 0.69 0.576631
Target:  5'- cGCACCGAG-CAGCGCCucggcGACUUcgGCc -3'
miRNA:   3'- -UGUGGCUCuGUUGCGGua---CUGGA--UGa -5'
26603 5' -52.9 NC_005357.1 + 14468 0.69 0.576631
Target:  5'- cCACCGAgGACGugcuCGCCAUccCCUACg -3'
miRNA:   3'- uGUGGCU-CUGUu---GCGGUAcuGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 26862 0.69 0.599355
Target:  5'- cGCGUCGucacuGACGGCGCCAUuGACCUGg- -3'
miRNA:   3'- -UGUGGCu----CUGUUGCGGUA-CUGGAUga -5'
26603 5' -52.9 NC_005357.1 + 23046 0.68 0.610768
Target:  5'- uACGCCGAagugGACAAgGCCcUGGCCgACc -3'
miRNA:   3'- -UGUGGCU----CUGUUgCGGuACUGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 37120 0.68 0.6222
Target:  5'- -gGCCGGcGACcuggaaaauaucGACGCCGUGGCCgACa -3'
miRNA:   3'- ugUGGCU-CUG------------UUGCGGUACUGGaUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.