miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26603 5' -52.9 NC_005357.1 + 41810 0.66 0.735138
Target:  5'- cGCGCCGAGGCuGAgGCCAUcaucGCCgACa -3'
miRNA:   3'- -UGUGGCUCUG-UUgCGGUAc---UGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 35819 0.66 0.756788
Target:  5'- gGCGgCG-GACuACGCCAUGcUCUACg -3'
miRNA:   3'- -UGUgGCuCUGuUGCGGUACuGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 13685 0.66 0.756788
Target:  5'- cGCACCGcgcuGGACGAUGCCAaGGCgCU-Ca -3'
miRNA:   3'- -UGUGGC----UCUGUUGCGGUaCUG-GAuGa -5'
26603 5' -52.9 NC_005357.1 + 32363 0.66 0.756788
Target:  5'- uCGCCccGACGACGCCucgGACgCUAUUg -3'
miRNA:   3'- uGUGGcuCUGUUGCGGua-CUG-GAUGA- -5'
26603 5' -52.9 NC_005357.1 + 28980 0.66 0.746025
Target:  5'- cGCGCCcGAGGC--CGCCAagcuggcgGGCCUGCc -3'
miRNA:   3'- -UGUGG-CUCUGuuGCGGUa-------CUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 40378 0.66 0.744942
Target:  5'- gACcCCGAGGaauugcGCGCCGUGuucuaucGCCUGCg -3'
miRNA:   3'- -UGuGGCUCUgu----UGCGGUAC-------UGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 14920 0.66 0.735138
Target:  5'- cGCGCCGAGAagcuGGCgGCCGaGGCCgccgGCa -3'
miRNA:   3'- -UGUGGCUCUg---UUG-CGGUaCUGGa---UGa -5'
26603 5' -52.9 NC_005357.1 + 14229 0.66 0.756788
Target:  5'- -gGCCGAccugGACAagGCGCCGc-ACCUGCUg -3'
miRNA:   3'- ugUGGCU----CUGU--UGCGGUacUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 14390 0.66 0.777887
Target:  5'- uCGCCGAcguguucuucGGCGACGCCGacaUGAUCgGCUu -3'
miRNA:   3'- uGUGGCU----------CUGUUGCGGU---ACUGGaUGA- -5'
26603 5' -52.9 NC_005357.1 + 17122 0.66 0.767413
Target:  5'- aGCGCCGGuGGCAGgGCCGgccgcacGACCUcaagGCa -3'
miRNA:   3'- -UGUGGCU-CUGUUgCGGUa------CUGGA----UGa -5'
26603 5' -52.9 NC_005357.1 + 34513 0.66 0.746025
Target:  5'- gACGCCGAGcGCAACGagCAgcuggcGAUCUACg -3'
miRNA:   3'- -UGUGGCUC-UGUUGCg-GUa-----CUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 24466 0.66 0.746025
Target:  5'- gACGCCGAcGACc-UGCUgcuUGGCCUGCg -3'
miRNA:   3'- -UGUGGCU-CUGuuGCGGu--ACUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 7933 0.66 0.766357
Target:  5'- aACACCGGcgcgaggauuuccGACAGCuugcCCGUGGCCUcgGCg -3'
miRNA:   3'- -UGUGGCU-------------CUGUUGc---GGUACUGGA--UGa -5'
26603 5' -52.9 NC_005357.1 + 33071 0.66 0.776847
Target:  5'- uCAUCGGGucgcgcaGCGACGCgGcGGCCUACa -3'
miRNA:   3'- uGUGGCUC-------UGUUGCGgUaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 35402 0.66 0.777887
Target:  5'- uACGCgCGAGAuCAACGCCAaGuCCU-Cg -3'
miRNA:   3'- -UGUG-GCUCU-GUUGCGGUaCuGGAuGa -5'
26603 5' -52.9 NC_005357.1 + 8444 0.66 0.756788
Target:  5'- aACAUCGGcGCGAUGUCGgcgucgaggUGGCCUGCg -3'
miRNA:   3'- -UGUGGCUcUGUUGCGGU---------ACUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 38548 0.66 0.777887
Target:  5'- gGCGgCGAcGGCAGCGC---GGCCUACa -3'
miRNA:   3'- -UGUgGCU-CUGUUGCGguaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 23468 0.67 0.689469
Target:  5'- cACGCCGGcGugGaacagguGCGCCGUgggaaucucGACCUGCg -3'
miRNA:   3'- -UGUGGCU-CugU-------UGCGGUA---------CUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 33577 0.67 0.724139
Target:  5'- gGCgACCGAGGcCAACGCgcUGGCCcGCg -3'
miRNA:   3'- -UG-UGGCUCU-GUUGCGguACUGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 39993 0.67 0.71304
Target:  5'- gGCGCCGAucuuCGAgGCC--GGCCUGCUg -3'
miRNA:   3'- -UGUGGCUcu--GUUgCGGuaCUGGAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.