miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26603 5' -52.9 NC_005357.1 + 41810 0.66 0.735138
Target:  5'- cGCGCCGAGGCuGAgGCCAUcaucGCCgACa -3'
miRNA:   3'- -UGUGGCUCUG-UUgCGGUAc---UGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 41792 0.69 0.576631
Target:  5'- gGCACCGAcucGACGccggACGCCGUGuCCacgGCg -3'
miRNA:   3'- -UGUGGCU---CUGU----UGCGGUACuGGa--UGa -5'
26603 5' -52.9 NC_005357.1 + 40378 0.66 0.744942
Target:  5'- gACcCCGAGGaauugcGCGCCGUGuucuaucGCCUGCg -3'
miRNA:   3'- -UGuGGCUCUgu----UGCGGUAC-------UGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 39993 0.67 0.71304
Target:  5'- gGCGCCGAucuuCGAgGCC--GGCCUGCUg -3'
miRNA:   3'- -UGUGGCUcu--GUUgCGGuaCUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 39688 0.68 0.667913
Target:  5'- cACGcCCGAG-CAGCGCCG-GGCCgcGCUc -3'
miRNA:   3'- -UGU-GGCUCuGUUGCGGUaCUGGa-UGA- -5'
26603 5' -52.9 NC_005357.1 + 38548 0.66 0.777887
Target:  5'- gGCGgCGAcGGCAGCGC---GGCCUACa -3'
miRNA:   3'- -UGUgGCU-CUGUUGCGguaCUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 37861 0.69 0.576631
Target:  5'- cGCACCGAG-CAGCGCCucggcGACUUcgGCc -3'
miRNA:   3'- -UGUGGCUCuGUUGCGGua---CUGGA--UGa -5'
26603 5' -52.9 NC_005357.1 + 37673 0.72 0.387992
Target:  5'- aACGCCGAGaACAucGCgGCCGUGGCCg--- -3'
miRNA:   3'- -UGUGGCUC-UGU--UG-CGGUACUGGauga -5'
26603 5' -52.9 NC_005357.1 + 37564 0.67 0.701856
Target:  5'- cGCGCUG-GGCAACGaCC-UGACCggGCa -3'
miRNA:   3'- -UGUGGCuCUGUUGC-GGuACUGGa-UGa -5'
26603 5' -52.9 NC_005357.1 + 37419 0.7 0.520835
Target:  5'- gGCGCUGAaagcgGACuGCGCC--GACCUGCUg -3'
miRNA:   3'- -UGUGGCU-----CUGuUGCGGuaCUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 37120 0.68 0.6222
Target:  5'- -gGCCGGcGACcuggaaaauaucGACGCCGUGGCCgACa -3'
miRNA:   3'- ugUGGCU-CUG------------UUGCGGUACUGGaUGa -5'
26603 5' -52.9 NC_005357.1 + 36928 0.72 0.397413
Target:  5'- gGCACCGAGuuGGCGCUAUGGCa---- -3'
miRNA:   3'- -UGUGGCUCugUUGCGGUACUGgauga -5'
26603 5' -52.9 NC_005357.1 + 36172 1.07 0.001654
Target:  5'- cACACCGAGACAACGCCAUGACCUACUu -3'
miRNA:   3'- -UGUGGCUCUGUUGCGGUACUGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 35819 0.66 0.756788
Target:  5'- gGCGgCG-GACuACGCCAUGcUCUACg -3'
miRNA:   3'- -UGUgGCuCUGuUGCGGUACuGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 35602 0.67 0.724139
Target:  5'- uCGCCGAgGGCAacgacgaaacccGCGCCGUGuCCcugGCUg -3'
miRNA:   3'- uGUGGCU-CUGU------------UGCGGUACuGGa--UGA- -5'
26603 5' -52.9 NC_005357.1 + 35402 0.66 0.777887
Target:  5'- uACGCgCGAGAuCAACGCCAaGuCCU-Cg -3'
miRNA:   3'- -UGUG-GCUCU-GUUGCGGUaCuGGAuGa -5'
26603 5' -52.9 NC_005357.1 + 34912 0.73 0.369596
Target:  5'- cGCACgGuAGACAACGCCAccucgGcaACCUGCUg -3'
miRNA:   3'- -UGUGgC-UCUGUUGCGGUa----C--UGGAUGA- -5'
26603 5' -52.9 NC_005357.1 + 34659 0.68 0.645082
Target:  5'- gACGCCGGcGCAgaucGCGCCG-GugCUGCa -3'
miRNA:   3'- -UGUGGCUcUGU----UGCGGUaCugGAUGa -5'
26603 5' -52.9 NC_005357.1 + 34513 0.66 0.746025
Target:  5'- gACGCCGAGcGCAACGagCAgcuggcGAUCUACg -3'
miRNA:   3'- -UGUGGCUC-UGUUGCg-GUa-----CUGGAUGa -5'
26603 5' -52.9 NC_005357.1 + 34426 0.68 0.667913
Target:  5'- gGCGCCaaGGGCAcguccgACGCCGUgGugCUGCUg -3'
miRNA:   3'- -UGUGGc-UCUGU------UGCGGUA-CugGAUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.