miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26604 3' -58.8 NC_005357.1 + 12281 0.67 0.420123
Target:  5'- cCGCUgAUGUCCGACgcggugcaggCCGgcggcguguuCUGGCGCg -3'
miRNA:   3'- -GCGG-UACGGGCUGaua-------GGC----------GACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 30413 0.66 0.450857
Target:  5'- uCGCCG-GCCaCGGCcgcgCUGCUGGC-Cg -3'
miRNA:   3'- -GCGGUaCGG-GCUGaua-GGCGACCGcG- -5'
26604 3' -58.8 NC_005357.1 + 2107 0.67 0.403402
Target:  5'- uCGCCGUGUCgucgguauaGAUUGcgCCGUUGGCGa -3'
miRNA:   3'- -GCGGUACGGg--------CUGAUa-GGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 8984 0.68 0.342535
Target:  5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3'
miRNA:   3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5'
26604 3' -58.8 NC_005357.1 + 38870 0.66 0.449878
Target:  5'- aCGCCcaGCCCGcugcugcGCUAUUCGgC-GGCGCc -3'
miRNA:   3'- -GCGGuaCGGGC-------UGAUAGGC-GaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 7734 0.67 0.422007
Target:  5'- aCGCUcgGCggCCGGCUugCUGUUGGCGa -3'
miRNA:   3'- -GCGGuaCG--GGCUGAuaGGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 37143 0.66 0.467678
Target:  5'- aCGCCGUGgCCGACaacgCCGCgaacaucaacacggUGGC-Cg -3'
miRNA:   3'- -GCGGUACgGGCUGaua-GGCG--------------ACCGcG- -5'
26604 3' -58.8 NC_005357.1 + 23063 0.65 0.476713
Target:  5'- gGCCcUGgCCGACcucaacggcaauUCCGCcgccUGGCGCc -3'
miRNA:   3'- gCGGuACgGGCUGau----------AGGCG----ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 8937 0.68 0.342535
Target:  5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3'
miRNA:   3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5'
26604 3' -58.8 NC_005357.1 + 5101 0.69 0.310847
Target:  5'- gGCCG-GCCCaGC-GUCCggugcgGCUGGCGCc -3'
miRNA:   3'- gCGGUaCGGGcUGaUAGG------CGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 9224 0.68 0.359232
Target:  5'- gGCCGUGCCgCGAUagccagcggUggCCGUgccgagGGCGCc -3'
miRNA:   3'- gCGGUACGG-GCUG---------AuaGGCGa-----CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 2726 0.68 0.354164
Target:  5'- gGCCGgacgcuugagcgcgGCCCGGCg--CUGCUcgGGCGUg -3'
miRNA:   3'- gCGGUa-------------CGGGCUGauaGGCGA--CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 36513 0.71 0.223403
Target:  5'- cCGCCAgcggcgaaaagaUGCCgGACgAUCUGCggugGGCGUu -3'
miRNA:   3'- -GCGGU------------ACGGgCUGaUAGGCGa---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 35054 0.66 0.47068
Target:  5'- cCGCgGUGCCCG-----CCGCUGGaCGa -3'
miRNA:   3'- -GCGgUACGGGCugauaGGCGACC-GCg -5'
26604 3' -58.8 NC_005357.1 + 36083 0.66 0.47068
Target:  5'- gGCCuucggGCCgGGCgcuUUgGCUGGgGCg -3'
miRNA:   3'- gCGGua---CGGgCUGau-AGgCGACCgCG- -5'
26604 3' -58.8 NC_005357.1 + 24689 0.66 0.460712
Target:  5'- aCGuCCAcGCCCaGGCUGUCCaucGGUGCc -3'
miRNA:   3'- -GC-GGUaCGGG-CUGAUAGGcgaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 12025 0.66 0.459721
Target:  5'- gGCCGUGgCCGGCgagGUCUugcccaGCgugucgaagucgaUGGCGCc -3'
miRNA:   3'- gCGGUACgGGCUGa--UAGG------CG-------------ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 33850 0.66 0.43822
Target:  5'- uCGCCGUgaccgucgugucgcGCCUGucGCUGcCCGCcaucGGCGCg -3'
miRNA:   3'- -GCGGUA--------------CGGGC--UGAUaGGCGa---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 40194 0.69 0.295859
Target:  5'- gGCCAagGCCCGGCguuUAUaCCGCgacaugGaGCGCg -3'
miRNA:   3'- gCGGUa-CGGGCUG---AUA-GGCGa-----C-CGCG- -5'
26604 3' -58.8 NC_005357.1 + 3176 0.69 0.310847
Target:  5'- uGgCAaGCCCGGC-GUCCGCUG-CGUa -3'
miRNA:   3'- gCgGUaCGGGCUGaUAGGCGACcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.