miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26604 3' -58.8 NC_005357.1 + 6352 0.74 0.145328
Target:  5'- gCGCCcgGCCCGAagg-CCGg-GGCGCu -3'
miRNA:   3'- -GCGGuaCGGGCUgauaGGCgaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 8718 0.67 0.376489
Target:  5'- uGCCgaacacgaagauGUGCCCGGCggg-CGC-GGCGCu -3'
miRNA:   3'- gCGG------------UACGGGCUGauagGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 2107 0.67 0.403402
Target:  5'- uCGCCGUGUCgucgguauaGAUUGcgCCGUUGGCGa -3'
miRNA:   3'- -GCGGUACGGg--------CUGAUa-GGCGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 23063 0.65 0.476713
Target:  5'- gGCCcUGgCCGACcucaacggcaauUCCGCcgccUGGCGCc -3'
miRNA:   3'- gCGGuACgGGCUGau----------AGGCG----ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 18754 0.7 0.241528
Target:  5'- uGUCcgGCCCGACcgagggUCGcCUGGUGCa -3'
miRNA:   3'- gCGGuaCGGGCUGaua---GGC-GACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 37741 0.7 0.260862
Target:  5'- gGCCAUucucGCCgCG-CUAUCCggcgcGCUGGUGCc -3'
miRNA:   3'- gCGGUA----CGG-GCuGAUAGG-----CGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 14714 0.69 0.288578
Target:  5'- aGuCCAUGaCCGGCggcgagCCGCUgccGGCGCg -3'
miRNA:   3'- gC-GGUACgGGCUGaua---GGCGA---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 16297 0.69 0.295859
Target:  5'- gCGCCAaaucUGCCgCGACgaacacaugCCGgcaUGGCGCa -3'
miRNA:   3'- -GCGGU----ACGG-GCUGaua------GGCg--ACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 8937 0.68 0.342535
Target:  5'- gGCCGUGCCgGAUUcgCCaGCggUGGcCGUg -3'
miRNA:   3'- gCGGUACGGgCUGAuaGG-CG--ACC-GCG- -5'
26604 3' -58.8 NC_005357.1 + 18514 0.68 0.367791
Target:  5'- aCGCCuAUG-CCGGCaUGgaagCCGCgGGCGUg -3'
miRNA:   3'- -GCGG-UACgGGCUG-AUa---GGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 2726 0.68 0.354164
Target:  5'- gGCCGgacgcuugagcgcgGCCCGGCg--CUGCUcgGGCGUg -3'
miRNA:   3'- gCGGUa-------------CGGGCUGauaGGCGA--CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 5101 0.69 0.310847
Target:  5'- gGCCG-GCCCaGC-GUCCggugcgGCUGGCGCc -3'
miRNA:   3'- gCGGUaCGGGcUGaUAGG------CGACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 14990 0.72 0.180663
Target:  5'- gCGCCAggGCCUG-Cgg-CCGCcgGGCGCg -3'
miRNA:   3'- -GCGGUa-CGGGCuGauaGGCGa-CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 9224 0.68 0.359232
Target:  5'- gGCCGUGCCgCGAUagccagcggUggCCGUgccgagGGCGCc -3'
miRNA:   3'- gCGGUACGG-GCUG---------AuaGGCGa-----CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 28965 0.71 0.211972
Target:  5'- gGUCAUGCCCGACaccgcgCCcgaggccgccaaGCUGGCGg -3'
miRNA:   3'- gCGGUACGGGCUGaua---GG------------CGACCGCg -5'
26604 3' -58.8 NC_005357.1 + 1757 0.69 0.303282
Target:  5'- gGUCAUGgCCGGCc-UgCGcCUGGCGCg -3'
miRNA:   3'- gCGGUACgGGCUGauAgGC-GACCGCG- -5'
26604 3' -58.8 NC_005357.1 + 29132 0.68 0.359232
Target:  5'- aCGCCGgcCCCGGCgcgCUGCaaucGGCGCu -3'
miRNA:   3'- -GCGGUacGGGCUGauaGGCGa---CCGCG- -5'
26604 3' -58.8 NC_005357.1 + 19314 0.67 0.394296
Target:  5'- aGCCGUuaCCG-CUGUcgCCGUgGGCGCc -3'
miRNA:   3'- gCGGUAcgGGCuGAUA--GGCGaCCGCG- -5'
26604 3' -58.8 NC_005357.1 + 41811 0.71 0.211972
Target:  5'- aCGCCGUGuCCaCGGCg--CUGCUGGC-Cg -3'
miRNA:   3'- -GCGGUAC-GG-GCUGauaGGCGACCGcG- -5'
26604 3' -58.8 NC_005357.1 + 7546 0.7 0.27444
Target:  5'- gCGgCGUGCUCGA---UCCGC-GGCGCc -3'
miRNA:   3'- -GCgGUACGGGCUgauAGGCGaCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.