Results 1 - 20 of 157 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 83 | 0.66 | 0.836939 |
Target: 5'- -uGCCUCGAagcgagccauuuCCAGAUCGUUcuGCGcGCCg -3' miRNA: 3'- cgUGGAGCU------------GGUCUGGUAGu-UGC-UGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 7353 | 0.66 | 0.836939 |
Target: 5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3' miRNA: 3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 2028 | 0.66 | 0.836939 |
Target: 5'- aGCACCggcauACCGG-CCGccUCGGCGACg -3' miRNA: 3'- -CGUGGagc--UGGUCuGGU--AGUUGCUGg -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 31879 | 0.66 | 0.836939 |
Target: 5'- uGCAagacccCCUC-ACCAGuuccGCCAUCGA-GGCCg -3' miRNA: 3'- -CGU------GGAGcUGGUC----UGGUAGUUgCUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 9599 | 0.66 | 0.836031 |
Target: 5'- cGCACCUCGGgCGugaguucGACguUCAG-GGCCu -3' miRNA: 3'- -CGUGGAGCUgGU-------CUGguAGUUgCUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 9827 | 0.66 | 0.834207 |
Target: 5'- gGC-CCUUGACgCGGGCCAgcuuggucacagcgUCGGCGGuguCCu -3' miRNA: 3'- -CGuGGAGCUG-GUCUGGU--------------AGUUGCU---GG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 33337 | 0.66 | 0.827754 |
Target: 5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3' miRNA: 3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 33289 | 0.66 | 0.827754 |
Target: 5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3' miRNA: 3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 33241 | 0.66 | 0.827754 |
Target: 5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3' miRNA: 3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 33385 | 0.66 | 0.827754 |
Target: 5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3' miRNA: 3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 16646 | 0.66 | 0.827754 |
Target: 5'- cGCGCCgcgCGcAUCGcGGCCAUCGuuGCcGCCg -3' miRNA: 3'- -CGUGGa--GC-UGGU-CUGGUAGU--UGcUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 27368 | 0.66 | 0.827754 |
Target: 5'- aGCA-CUCGuCCAG-CCAUU--CGGCCa -3' miRNA: 3'- -CGUgGAGCuGGUCuGGUAGuuGCUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 24025 | 0.66 | 0.824956 |
Target: 5'- cCACCuUCGccgacguggccgccACCGGcGCCAUCGGCaaGGCCa -3' miRNA: 3'- cGUGG-AGC--------------UGGUC-UGGUAGUUG--CUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 17912 | 0.66 | 0.818352 |
Target: 5'- cCACCUgGACguGAUCggCGugGGCg -3' miRNA: 3'- cGUGGAgCUGguCUGGuaGUugCUGg -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 3409 | 0.66 | 0.818352 |
Target: 5'- -uGCCUUGGCgGGGCCuuu--CGGCCc -3' miRNA: 3'- cgUGGAGCUGgUCUGGuaguuGCUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 34811 | 0.66 | 0.818352 |
Target: 5'- cGCGCCc---CCuGACCAUCAccACGGCa -3' miRNA: 3'- -CGUGGagcuGGuCUGGUAGU--UGCUGg -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 26716 | 0.66 | 0.818352 |
Target: 5'- cGCGCCaguUCGAugcCCAGGCggacgccuucuuCGUCGauaGCGGCCu -3' miRNA: 3'- -CGUGG---AGCU---GGUCUG------------GUAGU---UGCUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 33868 | 0.66 | 0.818352 |
Target: 5'- cGCGCCugUCGcuGCCc-GCCAUCGgcGCGGCUg -3' miRNA: 3'- -CGUGG--AGC--UGGucUGGUAGU--UGCUGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 35652 | 0.66 | 0.818352 |
Target: 5'- gGCGCUga-ACCAGGCCAUCGAgcagguCG-CCa -3' miRNA: 3'- -CGUGGagcUGGUCUGGUAGUU------GCuGG- -5' |
|||||||
26606 | 3' | -52.5 | NC_005357.1 | + | 34821 | 0.66 | 0.818352 |
Target: 5'- gGCGCUgcgCGACCAcGugcuguccACCGUCGccgACGACUu -3' miRNA: 3'- -CGUGGa--GCUGGU-C--------UGGUAGU---UGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home