miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 3' -52.5 NC_005357.1 + 83 0.66 0.836939
Target:  5'- -uGCCUCGAagcgagccauuuCCAGAUCGUUcuGCGcGCCg -3'
miRNA:   3'- cgUGGAGCU------------GGUCUGGUAGu-UGC-UGG- -5'
26606 3' -52.5 NC_005357.1 + 7353 0.66 0.836939
Target:  5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3'
miRNA:   3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 2028 0.66 0.836939
Target:  5'- aGCACCggcauACCGG-CCGccUCGGCGACg -3'
miRNA:   3'- -CGUGGagc--UGGUCuGGU--AGUUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 31879 0.66 0.836939
Target:  5'- uGCAagacccCCUC-ACCAGuuccGCCAUCGA-GGCCg -3'
miRNA:   3'- -CGU------GGAGcUGGUC----UGGUAGUUgCUGG- -5'
26606 3' -52.5 NC_005357.1 + 9599 0.66 0.836031
Target:  5'- cGCACCUCGGgCGugaguucGACguUCAG-GGCCu -3'
miRNA:   3'- -CGUGGAGCUgGU-------CUGguAGUUgCUGG- -5'
26606 3' -52.5 NC_005357.1 + 9827 0.66 0.834207
Target:  5'- gGC-CCUUGACgCGGGCCAgcuuggucacagcgUCGGCGGuguCCu -3'
miRNA:   3'- -CGuGGAGCUG-GUCUGGU--------------AGUUGCU---GG- -5'
26606 3' -52.5 NC_005357.1 + 33337 0.66 0.827754
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 33289 0.66 0.827754
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 33241 0.66 0.827754
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 33385 0.66 0.827754
Target:  5'- cGCGgCaCGGCCAccgcuGGCUAUCGcggcACGGCCa -3'
miRNA:   3'- -CGUgGaGCUGGU-----CUGGUAGU----UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 16646 0.66 0.827754
Target:  5'- cGCGCCgcgCGcAUCGcGGCCAUCGuuGCcGCCg -3'
miRNA:   3'- -CGUGGa--GC-UGGU-CUGGUAGU--UGcUGG- -5'
26606 3' -52.5 NC_005357.1 + 27368 0.66 0.827754
Target:  5'- aGCA-CUCGuCCAG-CCAUU--CGGCCa -3'
miRNA:   3'- -CGUgGAGCuGGUCuGGUAGuuGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 24025 0.66 0.824956
Target:  5'- cCACCuUCGccgacguggccgccACCGGcGCCAUCGGCaaGGCCa -3'
miRNA:   3'- cGUGG-AGC--------------UGGUC-UGGUAGUUG--CUGG- -5'
26606 3' -52.5 NC_005357.1 + 17912 0.66 0.818352
Target:  5'- cCACCUgGACguGAUCggCGugGGCg -3'
miRNA:   3'- cGUGGAgCUGguCUGGuaGUugCUGg -5'
26606 3' -52.5 NC_005357.1 + 3409 0.66 0.818352
Target:  5'- -uGCCUUGGCgGGGCCuuu--CGGCCc -3'
miRNA:   3'- cgUGGAGCUGgUCUGGuaguuGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 34811 0.66 0.818352
Target:  5'- cGCGCCc---CCuGACCAUCAccACGGCa -3'
miRNA:   3'- -CGUGGagcuGGuCUGGUAGU--UGCUGg -5'
26606 3' -52.5 NC_005357.1 + 26716 0.66 0.818352
Target:  5'- cGCGCCaguUCGAugcCCAGGCggacgccuucuuCGUCGauaGCGGCCu -3'
miRNA:   3'- -CGUGG---AGCU---GGUCUG------------GUAGU---UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 33868 0.66 0.818352
Target:  5'- cGCGCCugUCGcuGCCc-GCCAUCGgcGCGGCUg -3'
miRNA:   3'- -CGUGG--AGC--UGGucUGGUAGU--UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 35652 0.66 0.818352
Target:  5'- gGCGCUga-ACCAGGCCAUCGAgcagguCG-CCa -3'
miRNA:   3'- -CGUGGagcUGGUCUGGUAGUU------GCuGG- -5'
26606 3' -52.5 NC_005357.1 + 34821 0.66 0.818352
Target:  5'- gGCGCUgcgCGACCAcGugcuguccACCGUCGccgACGACUu -3'
miRNA:   3'- -CGUGGa--GCUGGU-C--------UGGUAGU---UGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.