miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 3' -52.5 NC_005357.1 + 14372 0.8 0.161495
Target:  5'- cGCugUUCGAgCAGACCGUCGcCGACg -3'
miRNA:   3'- -CGugGAGCUgGUCUGGUAGUuGCUGg -5'
26606 3' -52.5 NC_005357.1 + 3805 0.73 0.421962
Target:  5'- gGCAgCaUGACCAGGCgGUCGggggcgccguuGCGACCa -3'
miRNA:   3'- -CGUgGaGCUGGUCUGgUAGU-----------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 29631 0.72 0.461887
Target:  5'- cGCACUUCGcACCAGcCUGUCugaGGCCg -3'
miRNA:   3'- -CGUGGAGC-UGGUCuGGUAGuugCUGG- -5'
26606 3' -52.5 NC_005357.1 + 7353 0.66 0.836939
Target:  5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3'
miRNA:   3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 33233 0.77 0.23711
Target:  5'- cGCGCCgcCGAgCAGGCCAacgUCGACGGCg -3'
miRNA:   3'- -CGUGGa-GCUgGUCUGGU---AGUUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 23896 0.77 0.266377
Target:  5'- -gACUUCGGCCAGGCCAaucccaacaccggcaUgGAUGACCg -3'
miRNA:   3'- cgUGGAGCUGGUCUGGU---------------AgUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 20365 0.75 0.315652
Target:  5'- cGCGCCgaccgCGACCcGAgCAagcgCGACGACCg -3'
miRNA:   3'- -CGUGGa----GCUGGuCUgGUa---GUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 26806 0.75 0.323692
Target:  5'- aGCACCUCGAagGGAaaaCCGUCAGCauccuGGCCg -3'
miRNA:   3'- -CGUGGAGCUggUCU---GGUAGUUG-----CUGG- -5'
26606 3' -52.5 NC_005357.1 + 23835 0.74 0.357364
Target:  5'- aCugCUccaagucucggaCGGCCAGGCCGUCAccgcgagcGCGGCCu -3'
miRNA:   3'- cGugGA------------GCUGGUCUGGUAGU--------UGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 1672 0.73 0.421962
Target:  5'- uGCACCUCGcGCuUGGACUcgCGGCGAgCCa -3'
miRNA:   3'- -CGUGGAGC-UG-GUCUGGuaGUUGCU-GG- -5'
26606 3' -52.5 NC_005357.1 + 30541 0.74 0.366157
Target:  5'- cGCACC-CGACCAGAagaacaCCcUCAugGGCg -3'
miRNA:   3'- -CGUGGaGCUGGUCU------GGuAGUugCUGg -5'
26606 3' -52.5 NC_005357.1 + 9572 0.75 0.323692
Target:  5'- -aAUCUCGGCgCcGACCGUCuGCGGCCa -3'
miRNA:   3'- cgUGGAGCUG-GuCUGGUAGuUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 10073 0.79 0.185628
Target:  5'- -gGCCUCGGCgGcGACCG-CAGCGACCu -3'
miRNA:   3'- cgUGGAGCUGgU-CUGGUaGUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 4392 0.74 0.393418
Target:  5'- gGCGCCgUCGcGCCGGGCCuUgAGCGugCg -3'
miRNA:   3'- -CGUGG-AGC-UGGUCUGGuAgUUGCugG- -5'
26606 3' -52.5 NC_005357.1 + 6584 0.79 0.185628
Target:  5'- cCGCCUCGGCCAGgggGCUgcggucuuuGUCGAUGACCa -3'
miRNA:   3'- cGUGGAGCUGGUC---UGG---------UAGUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 35110 0.75 0.323692
Target:  5'- gGCugCUgCGuuCgCAGACCAUCGACGGCg -3'
miRNA:   3'- -CGugGA-GCu-G-GUCUGGUAGUUGCUGg -5'
26606 3' -52.5 NC_005357.1 + 23115 0.73 0.402793
Target:  5'- cGCGCCUucaucgaaggcaUGaACCAGACCca-GGCGACCa -3'
miRNA:   3'- -CGUGGA------------GC-UGGUCUGGuagUUGCUGG- -5'
26606 3' -52.5 NC_005357.1 + 7475 0.72 0.451716
Target:  5'- uGCACCaggacUCGACCAGAUCGaCcGCGcCCa -3'
miRNA:   3'- -CGUGG-----AGCUGGUCUGGUaGuUGCuGG- -5'
26606 3' -52.5 NC_005357.1 + 18870 0.77 0.23711
Target:  5'- cGCACCugccggcgaugUCGGCCgAGGCCAUCGaccGCGugCg -3'
miRNA:   3'- -CGUGG-----------AGCUGG-UCUGGUAGU---UGCugG- -5'
26606 3' -52.5 NC_005357.1 + 16230 0.76 0.270587
Target:  5'- aCGCCUCGACCuacaccgaaGCCAUCGccaccgaaaucuGCGACCg -3'
miRNA:   3'- cGUGGAGCUGGuc-------UGGUAGU------------UGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.