Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26606 | 5' | -57.1 | NC_005357.1 | + | 36856 | 0.67 | 0.497598 |
Target: 5'- cGUGGaguAUGCCGGCCUCGacaucgaagCCAUGCg -3' miRNA: 3'- -UACCagcUAUGGCUGGAGCg--------GGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 7823 | 0.67 | 0.49656 |
Target: 5'- uAUGGUCGAggcgcgGCUgcacgauGACCagGCgCACGCg -3' miRNA: 3'- -UACCAGCUa-----UGG-------CUGGagCGgGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 31330 | 0.67 | 0.48726 |
Target: 5'- uUGGcCGcaGCCGACaaggUGCUCGCGCg -3' miRNA: 3'- uACCaGCuaUGGCUGga--GCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 24128 | 0.67 | 0.48726 |
Target: 5'- -gGGUCGuaguccaGCCGGCUgCGCgCCugGCc -3' miRNA: 3'- uaCCAGCua-----UGGCUGGaGCG-GGugCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 15537 | 0.67 | 0.48726 |
Target: 5'- uAUGcaCGGUGCCGGCCUCcacGUCCAgGUc -3' miRNA: 3'- -UACcaGCUAUGGCUGGAG---CGGGUgCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 29331 | 0.67 | 0.477025 |
Target: 5'- gGUGG-CGGUcGCCGGCCaaguccUCGaaCCACGCg -3' miRNA: 3'- -UACCaGCUA-UGGCUGG------AGCg-GGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 28483 | 0.67 | 0.470935 |
Target: 5'- aGUGGUCGAgcauccgcucggcauUGCCGAaCUCggucaucuGCCgGCGCu -3' miRNA: 3'- -UACCAGCU---------------AUGGCUgGAG--------CGGgUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 28710 | 0.67 | 0.466897 |
Target: 5'- -aGGUCGAUGCUG-UCg-GCgCACGCg -3' miRNA: 3'- uaCCAGCUAUGGCuGGagCGgGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 10850 | 0.67 | 0.456881 |
Target: 5'- gGUGGUCGAgcagGCCcugcguGGCUUCGgUCgGCGCg -3' miRNA: 3'- -UACCAGCUa---UGG------CUGGAGC-GGgUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 21811 | 0.67 | 0.456881 |
Target: 5'- -aGGcCGAcACCGACCUgcgaCGCcgCCugGCg -3' miRNA: 3'- uaCCaGCUaUGGCUGGA----GCG--GGugCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 28917 | 0.68 | 0.437203 |
Target: 5'- -cGGaCGGcaaACCGcuuACCUCGCCCaagGCGCg -3' miRNA: 3'- uaCCaGCUa--UGGC---UGGAGCGGG---UGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 14214 | 0.68 | 0.427548 |
Target: 5'- cGUGGUCGucggcgugGCCGACCUggacaaggCGCCgCACcuGCu -3' miRNA: 3'- -UACCAGCua------UGGCUGGA--------GCGG-GUG--CG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 20963 | 0.68 | 0.427548 |
Target: 5'- cAUGGUCGAgGCCaacauCCUgcCGCCCcCGCc -3' miRNA: 3'- -UACCAGCUaUGGcu---GGA--GCGGGuGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 30565 | 0.68 | 0.418021 |
Target: 5'- cAUGGgCGAUAUUGGCgcggggUUCGCCCAgGCc -3' miRNA: 3'- -UACCaGCUAUGGCUG------GAGCGGGUgCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 35431 | 0.68 | 0.408624 |
Target: 5'- ----gCGA-GCCGACC-CGCUCGCGCg -3' miRNA: 3'- uaccaGCUaUGGCUGGaGCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 11205 | 0.68 | 0.408624 |
Target: 5'- -cGGUCaAUGCCgcgcauGACCgccacguuccCGCCCACGCc -3' miRNA: 3'- uaCCAGcUAUGG------CUGGa---------GCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 3637 | 0.69 | 0.396607 |
Target: 5'- gGUGGUaauaGGUuugcguuuacucacGCCaGcACCUCGUCCACGCc -3' miRNA: 3'- -UACCAg---CUA--------------UGG-C-UGGAGCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 10111 | 0.69 | 0.390231 |
Target: 5'- -aGGUCGGUaguGCCuGuCCUCGUaccggCCACGCc -3' miRNA: 3'- uaCCAGCUA---UGG-CuGGAGCG-----GGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 32117 | 0.69 | 0.390231 |
Target: 5'- cUGGcCGcUGCCGACCUcgaCGCCCcCGa -3' miRNA: 3'- uACCaGCuAUGGCUGGA---GCGGGuGCg -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 23954 | 0.69 | 0.38124 |
Target: 5'- gGUGGaCGAaucgGCCGACgC-CGCCgGCGCc -3' miRNA: 3'- -UACCaGCUa---UGGCUG-GaGCGGgUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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