Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26606 | 5' | -57.1 | NC_005357.1 | + | 25300 | 0.7 | 0.314427 |
Target: 5'- -aGGUCGugcgGCCGGCCcUGCCaccgGCGCu -3' miRNA: 3'- uaCCAGCua--UGGCUGGaGCGGg---UGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 5196 | 0.7 | 0.314427 |
Target: 5'- --cGUCGAUauuGCCGGCUaccgUGCCCACGUc -3' miRNA: 3'- uacCAGCUA---UGGCUGGa---GCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 18911 | 0.7 | 0.338402 |
Target: 5'- -aGGUCGAUGa-GGUCggCGCCCGCGCu -3' miRNA: 3'- uaCCAGCUAUggCUGGa-GCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 41152 | 0.7 | 0.346683 |
Target: 5'- -gGGUCGAgggccgggaaUACCGGCgCUCGCCgGacgGCg -3' miRNA: 3'- uaCCAGCU----------AUGGCUG-GAGCGGgUg--CG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 37676 | 0.7 | 0.346683 |
Target: 5'- -cGGUCGAUAaaGACCagCGCCagaUugGCa -3' miRNA: 3'- uaCCAGCUAUggCUGGa-GCGG---GugCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 23547 | 0.69 | 0.35426 |
Target: 5'- -cGGUCGAUggccucgGCCGACaUCGCCgGCa- -3' miRNA: 3'- uaCCAGCUA-------UGGCUGgAGCGGgUGcg -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 10000 | 0.69 | 0.363677 |
Target: 5'- -gGGUCGAaagUGCCGcgcgcccgGCCccCGCCCugGUa -3' miRNA: 3'- uaCCAGCU---AUGGC--------UGGa-GCGGGugCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 18475 | 0.69 | 0.372388 |
Target: 5'- -cGGcaaAUGCCGACCUCGCCgGgCGUg -3' miRNA: 3'- uaCCagcUAUGGCUGGAGCGGgU-GCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 25525 | 0.69 | 0.372388 |
Target: 5'- -aGGUCGGUuuuGCCGccGCCggcagCGCCCcCGUa -3' miRNA: 3'- uaCCAGCUA---UGGC--UGGa----GCGGGuGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 12910 | 0.69 | 0.372388 |
Target: 5'- uUGG-CGAUGCgcuCGGCCgCGCCCauaACGCu -3' miRNA: 3'- uACCaGCUAUG---GCUGGaGCGGG---UGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 21706 | 0.69 | 0.372388 |
Target: 5'- -aGGUCGAgGuuGACCUCGa--ACGCg -3' miRNA: 3'- uaCCAGCUaUggCUGGAGCgggUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 23954 | 0.69 | 0.38124 |
Target: 5'- gGUGGaCGAaucgGCCGACgC-CGCCgGCGCc -3' miRNA: 3'- -UACCaGCUa---UGGCUG-GaGCGGgUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 32117 | 0.69 | 0.390231 |
Target: 5'- cUGGcCGcUGCCGACCUcgaCGCCCcCGa -3' miRNA: 3'- uACCaGCuAUGGCUGGA---GCGGGuGCg -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 10111 | 0.69 | 0.390231 |
Target: 5'- -aGGUCGGUaguGCCuGuCCUCGUaccggCCACGCc -3' miRNA: 3'- uaCCAGCUA---UGG-CuGGAGCG-----GGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 3637 | 0.69 | 0.396607 |
Target: 5'- gGUGGUaauaGGUuugcguuuacucacGCCaGcACCUCGUCCACGCc -3' miRNA: 3'- -UACCAg---CUA--------------UGG-C-UGGAGCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 35431 | 0.68 | 0.408624 |
Target: 5'- ----gCGA-GCCGACC-CGCUCGCGCg -3' miRNA: 3'- uaccaGCUaUGGCUGGaGCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 11205 | 0.68 | 0.408624 |
Target: 5'- -cGGUCaAUGCCgcgcauGACCgccacguuccCGCCCACGCc -3' miRNA: 3'- uaCCAGcUAUGG------CUGGa---------GCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 30565 | 0.68 | 0.418021 |
Target: 5'- cAUGGgCGAUAUUGGCgcggggUUCGCCCAgGCc -3' miRNA: 3'- -UACCaGCUAUGGCUG------GAGCGGGUgCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 20963 | 0.68 | 0.427548 |
Target: 5'- cAUGGUCGAgGCCaacauCCUgcCGCCCcCGCc -3' miRNA: 3'- -UACCAGCUaUGGcu---GGA--GCGGGuGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 14214 | 0.68 | 0.427548 |
Target: 5'- cGUGGUCGucggcgugGCCGACCUggacaaggCGCCgCACcuGCu -3' miRNA: 3'- -UACCAGCua------UGGCUGGA--------GCGG-GUG--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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