miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 5' -57.1 NC_005357.1 + 36981 1.09 0.000525
Target:  5'- gAUGGUCGAUACCGACCUCGCCCACGCc -3'
miRNA:   3'- -UACCAGCUAUGGCUGGAGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 14839 0.79 0.085414
Target:  5'- -aGGUCGAUGCCGuuggcgGCCagCGCCgCACGCu -3'
miRNA:   3'- uaCCAGCUAUGGC------UGGa-GCGG-GUGCG- -5'
26606 5' -57.1 NC_005357.1 + 8834 0.76 0.1236
Target:  5'- -cGGccUUGAUACCGuCCUCGCCgACGUa -3'
miRNA:   3'- uaCC--AGCUAUGGCuGGAGCGGgUGCG- -5'
26606 5' -57.1 NC_005357.1 + 13395 0.76 0.127119
Target:  5'- -cGGUgGGUAUCGACCUgGCCgaaGCGCg -3'
miRNA:   3'- uaCCAgCUAUGGCUGGAgCGGg--UGCG- -5'
26606 5' -57.1 NC_005357.1 + 12549 0.76 0.142138
Target:  5'- -gGcGUCGGUgaauuucuuGCCGGCCUCGCgCUGCGCg -3'
miRNA:   3'- uaC-CAGCUA---------UGGCUGGAGCG-GGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 13487 0.74 0.167721
Target:  5'- cUGGgCGAUGCCGACCgCGCCUuuGgGCg -3'
miRNA:   3'- uACCaGCUAUGGCUGGaGCGGG--UgCG- -5'
26606 5' -57.1 NC_005357.1 + 28662 0.74 0.167721
Target:  5'- -aGaUCGGUGCCGgcgGCCUCGCCaGCGCg -3'
miRNA:   3'- uaCcAGCUAUGGC---UGGAGCGGgUGCG- -5'
26606 5' -57.1 NC_005357.1 + 21327 0.74 0.177128
Target:  5'- -gGGcUUGAUGCCGGCCaccgCGCCCAgGUu -3'
miRNA:   3'- uaCC-AGCUAUGGCUGGa---GCGGGUgCG- -5'
26606 5' -57.1 NC_005357.1 + 8375 0.74 0.177128
Target:  5'- -cGGcUCGAacCCGGCCUCGCgCugGCu -3'
miRNA:   3'- uaCC-AGCUauGGCUGGAGCGgGugCG- -5'
26606 5' -57.1 NC_005357.1 + 28160 0.74 0.182005
Target:  5'- gGUGGUCag-AUCGACCacgccgUUGCCCACGCc -3'
miRNA:   3'- -UACCAGcuaUGGCUGG------AGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 33815 0.73 0.208206
Target:  5'- -aGGgCG-UACCGGCCaCGCCUACGCc -3'
miRNA:   3'- uaCCaGCuAUGGCUGGaGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 1756 0.72 0.231456
Target:  5'- -cGGUCaugGCCGGCCUgCGCCUGgCGCg -3'
miRNA:   3'- uaCCAGcuaUGGCUGGA-GCGGGU-GCG- -5'
26606 5' -57.1 NC_005357.1 + 25343 0.71 0.270391
Target:  5'- -cGGcCGAgaaccgcGCCGGCUUCGCCUucguGCGCg -3'
miRNA:   3'- uaCCaGCUa------UGGCUGGAGCGGG----UGCG- -5'
26606 5' -57.1 NC_005357.1 + 4255 0.71 0.270391
Target:  5'- --aGUCGGUGCCGGCCgucagCGCCgGCa- -3'
miRNA:   3'- uacCAGCUAUGGCUGGa----GCGGgUGcg -5'
26606 5' -57.1 NC_005357.1 + 17858 0.71 0.27737
Target:  5'- -cGGccCGAccgugGCCGGCCUCGCcaucgCCGCGCu -3'
miRNA:   3'- uaCCa-GCUa----UGGCUGGAGCG-----GGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 17613 0.71 0.27737
Target:  5'- --uGUCGAUACCGGCCUCGauguuugCCGCa- -3'
miRNA:   3'- uacCAGCUAUGGCUGGAGCg------GGUGcg -5'
26606 5' -57.1 NC_005357.1 + 17840 0.71 0.27737
Target:  5'- -gGGUUGAUGCCcGCCaccguggccucgUCGCCCAgGUa -3'
miRNA:   3'- uaCCAGCUAUGGcUGG------------AGCGGGUgCG- -5'
26606 5' -57.1 NC_005357.1 + 16623 0.71 0.284493
Target:  5'- -cGGUgcagaucaaCGAUACCGAgCgCGCCgCGCGCa -3'
miRNA:   3'- uaCCA---------GCUAUGGCUgGaGCGG-GUGCG- -5'
26606 5' -57.1 NC_005357.1 + 24722 0.71 0.29176
Target:  5'- -cGGUCGG-GCCGcuuccACCgCGCCUGCGCg -3'
miRNA:   3'- uaCCAGCUaUGGC-----UGGaGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 5454 0.7 0.306726
Target:  5'- -aGGUCGGUAUCGACCaUCaCgCCGCGg -3'
miRNA:   3'- uaCCAGCUAUGGCUGG-AGcG-GGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.