miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 5' -57.1 NC_005357.1 + 25525 0.69 0.372388
Target:  5'- -aGGUCGGUuuuGCCGccGCCggcagCGCCCcCGUa -3'
miRNA:   3'- uaCCAGCUA---UGGC--UGGa----GCGGGuGCG- -5'
26606 5' -57.1 NC_005357.1 + 24722 0.71 0.29176
Target:  5'- -cGGUCGG-GCCGcuuccACCgCGCCUGCGCg -3'
miRNA:   3'- uaCCAGCUaUGGC-----UGGaGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 5196 0.7 0.314427
Target:  5'- --cGUCGAUauuGCCGGCUaccgUGCCCACGUc -3'
miRNA:   3'- uacCAGCUA---UGGCUGGa---GCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 25300 0.7 0.314427
Target:  5'- -aGGUCGugcgGCCGGCCcUGCCaccgGCGCu -3'
miRNA:   3'- uaCCAGCua--UGGCUGGaGCGGg---UGCG- -5'
26606 5' -57.1 NC_005357.1 + 18911 0.7 0.338402
Target:  5'- -aGGUCGAUGa-GGUCggCGCCCGCGCu -3'
miRNA:   3'- uaCCAGCUAUggCUGGa-GCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 37676 0.7 0.346683
Target:  5'- -cGGUCGAUAaaGACCagCGCCagaUugGCa -3'
miRNA:   3'- uaCCAGCUAUggCUGGa-GCGG---GugCG- -5'
26606 5' -57.1 NC_005357.1 + 41152 0.7 0.346683
Target:  5'- -gGGUCGAgggccgggaaUACCGGCgCUCGCCgGacgGCg -3'
miRNA:   3'- uaCCAGCU----------AUGGCUG-GAGCGGgUg--CG- -5'
26606 5' -57.1 NC_005357.1 + 23547 0.69 0.35426
Target:  5'- -cGGUCGAUggccucgGCCGACaUCGCCgGCa- -3'
miRNA:   3'- uaCCAGCUA-------UGGCUGgAGCGGgUGcg -5'
26606 5' -57.1 NC_005357.1 + 10000 0.69 0.363677
Target:  5'- -gGGUCGAaagUGCCGcgcgcccgGCCccCGCCCugGUa -3'
miRNA:   3'- uaCCAGCU---AUGGC--------UGGa-GCGGGugCG- -5'
26606 5' -57.1 NC_005357.1 + 17840 0.71 0.27737
Target:  5'- -gGGUUGAUGCCcGCCaccguggccucgUCGCCCAgGUa -3'
miRNA:   3'- uaCCAGCUAUGGcUGG------------AGCGGGUgCG- -5'
26606 5' -57.1 NC_005357.1 + 17613 0.71 0.27737
Target:  5'- --uGUCGAUACCGGCCUCGauguuugCCGCa- -3'
miRNA:   3'- uacCAGCUAUGGCUGGAGCg------GGUGcg -5'
26606 5' -57.1 NC_005357.1 + 4255 0.71 0.270391
Target:  5'- --aGUCGGUGCCGGCCgucagCGCCgGCa- -3'
miRNA:   3'- uacCAGCUAUGGCUGGa----GCGGgUGcg -5'
26606 5' -57.1 NC_005357.1 + 14839 0.79 0.085414
Target:  5'- -aGGUCGAUGCCGuuggcgGCCagCGCCgCACGCu -3'
miRNA:   3'- uaCCAGCUAUGGC------UGGa-GCGG-GUGCG- -5'
26606 5' -57.1 NC_005357.1 + 12549 0.76 0.142138
Target:  5'- -gGcGUCGGUgaauuucuuGCCGGCCUCGCgCUGCGCg -3'
miRNA:   3'- uaC-CAGCUA---------UGGCUGGAGCG-GGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 13487 0.74 0.167721
Target:  5'- cUGGgCGAUGCCGACCgCGCCUuuGgGCg -3'
miRNA:   3'- uACCaGCUAUGGCUGGaGCGGG--UgCG- -5'
26606 5' -57.1 NC_005357.1 + 28662 0.74 0.167721
Target:  5'- -aGaUCGGUGCCGgcgGCCUCGCCaGCGCg -3'
miRNA:   3'- uaCcAGCUAUGGC---UGGAGCGGgUGCG- -5'
26606 5' -57.1 NC_005357.1 + 21327 0.74 0.177128
Target:  5'- -gGGcUUGAUGCCGGCCaccgCGCCCAgGUu -3'
miRNA:   3'- uaCC-AGCUAUGGCUGGa---GCGGGUgCG- -5'
26606 5' -57.1 NC_005357.1 + 8375 0.74 0.177128
Target:  5'- -cGGcUCGAacCCGGCCUCGCgCugGCu -3'
miRNA:   3'- uaCC-AGCUauGGCUGGAGCGgGugCG- -5'
26606 5' -57.1 NC_005357.1 + 28160 0.74 0.182005
Target:  5'- gGUGGUCag-AUCGACCacgccgUUGCCCACGCc -3'
miRNA:   3'- -UACCAGcuaUGGCUGG------AGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 33815 0.73 0.208206
Target:  5'- -aGGgCG-UACCGGCCaCGCCUACGCc -3'
miRNA:   3'- uaCCaGCuAUGGCUGGaGCGGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.