miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 5' -57.1 NC_005357.1 + 8834 0.76 0.1236
Target:  5'- -cGGccUUGAUACCGuCCUCGCCgACGUa -3'
miRNA:   3'- uaCC--AGCUAUGGCuGGAGCGGgUGCG- -5'
26606 5' -57.1 NC_005357.1 + 616 0.67 0.508033
Target:  5'- -cGG-CGAUGauGGCCUCaGCCUcgGCGCg -3'
miRNA:   3'- uaCCaGCUAUggCUGGAG-CGGG--UGCG- -5'
26606 5' -57.1 NC_005357.1 + 36025 0.66 0.51856
Target:  5'- cAUGGgccgCGAcuacaccggGCCGGCCg-GCCUGCGCc -3'
miRNA:   3'- -UACCa---GCUa--------UGGCUGGagCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 27029 0.66 0.572339
Target:  5'- -cGGUCGu--CCGGCaucuUCGCCggcccgCACGCg -3'
miRNA:   3'- uaCCAGCuauGGCUGg---AGCGG------GUGCG- -5'
26606 5' -57.1 NC_005357.1 + 17858 0.71 0.27737
Target:  5'- -cGGccCGAccgugGCCGGCCUCGCcaucgCCGCGCu -3'
miRNA:   3'- uaCCa-GCUa----UGGCUGGAGCG-----GGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 16623 0.71 0.284493
Target:  5'- -cGGUgcagaucaaCGAUACCGAgCgCGCCgCGCGCa -3'
miRNA:   3'- uaCCA---------GCUAUGGCUgGaGCGG-GUGCG- -5'
26606 5' -57.1 NC_005357.1 + 18475 0.69 0.372388
Target:  5'- -cGGcaaAUGCCGACCUCGCCgGgCGUg -3'
miRNA:   3'- uaCCagcUAUGGCUGGAGCGGgU-GCG- -5'
26606 5' -57.1 NC_005357.1 + 23954 0.69 0.38124
Target:  5'- gGUGGaCGAaucgGCCGACgC-CGCCgGCGCc -3'
miRNA:   3'- -UACCaGCUa---UGGCUG-GaGCGGgUGCG- -5'
26606 5' -57.1 NC_005357.1 + 20963 0.68 0.427548
Target:  5'- cAUGGUCGAgGCCaacauCCUgcCGCCCcCGCc -3'
miRNA:   3'- -UACCAGCUaUGGcu---GGA--GCGGGuGCG- -5'
26606 5' -57.1 NC_005357.1 + 7823 0.67 0.49656
Target:  5'- uAUGGUCGAggcgcgGCUgcacgauGACCagGCgCACGCg -3'
miRNA:   3'- -UACCAGCUa-----UGG-------CUGGagCGgGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 28917 0.68 0.437203
Target:  5'- -cGGaCGGcaaACCGcuuACCUCGCCCaagGCGCg -3'
miRNA:   3'- uaCCaGCUa--UGGC---UGGAGCGGG---UGCG- -5'
26606 5' -57.1 NC_005357.1 + 30565 0.68 0.418021
Target:  5'- cAUGGgCGAUAUUGGCgcggggUUCGCCCAgGCc -3'
miRNA:   3'- -UACCaGCUAUGGCUG------GAGCGGGUgCG- -5'
26606 5' -57.1 NC_005357.1 + 13395 0.76 0.127119
Target:  5'- -cGGUgGGUAUCGACCUgGCCgaaGCGCg -3'
miRNA:   3'- uaCCAgCUAUGGCUGGAgCGGg--UGCG- -5'
26606 5' -57.1 NC_005357.1 + 21811 0.67 0.456881
Target:  5'- -aGGcCGAcACCGACCUgcgaCGCcgCCugGCg -3'
miRNA:   3'- uaCCaGCUaUGGCUGGA----GCG--GGugCG- -5'
26606 5' -57.1 NC_005357.1 + 1756 0.72 0.231456
Target:  5'- -cGGUCaugGCCGGCCUgCGCCUGgCGCg -3'
miRNA:   3'- uaCCAGcuaUGGCUGGA-GCGGGU-GCG- -5'
26606 5' -57.1 NC_005357.1 + 3637 0.69 0.396607
Target:  5'- gGUGGUaauaGGUuugcguuuacucacGCCaGcACCUCGUCCACGCc -3'
miRNA:   3'- -UACCAg---CUA--------------UGG-C-UGGAGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 31330 0.67 0.48726
Target:  5'- uUGGcCGcaGCCGACaaggUGCUCGCGCg -3'
miRNA:   3'- uACCaGCuaUGGCUGga--GCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 33641 0.66 0.51856
Target:  5'- -cGG-CGcgGCCGACCcaucgUGCgCCGCGUg -3'
miRNA:   3'- uaCCaGCuaUGGCUGGa----GCG-GGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 25343 0.71 0.270391
Target:  5'- -cGGcCGAgaaccgcGCCGGCUUCGCCUucguGCGCg -3'
miRNA:   3'- uaCCaGCUa------UGGCUGGAGCGGG----UGCG- -5'
26606 5' -57.1 NC_005357.1 + 5454 0.7 0.306726
Target:  5'- -aGGUCGGUAUCGACCaUCaCgCCGCGg -3'
miRNA:   3'- uaCCAGCUAUGGCUGG-AGcG-GGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.