Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26606 | 5' | -57.1 | NC_005357.1 | + | 616 | 0.67 | 0.508033 |
Target: 5'- -cGG-CGAUGauGGCCUCaGCCUcgGCGCg -3' miRNA: 3'- uaCCaGCUAUggCUGGAG-CGGG--UGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 688 | 0.66 | 0.572339 |
Target: 5'- -cGG-CGGcGCCGGCCgggcCGCCCAagauacCGCc -3' miRNA: 3'- uaCCaGCUaUGGCUGGa---GCGGGU------GCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 1756 | 0.72 | 0.231456 |
Target: 5'- -cGGUCaugGCCGGCCUgCGCCUGgCGCg -3' miRNA: 3'- uaCCAGcuaUGGCUGGA-GCGGGU-GCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 3637 | 0.69 | 0.396607 |
Target: 5'- gGUGGUaauaGGUuugcguuuacucacGCCaGcACCUCGUCCACGCc -3' miRNA: 3'- -UACCAg---CUA--------------UGG-C-UGGAGCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 4255 | 0.71 | 0.270391 |
Target: 5'- --aGUCGGUGCCGGCCgucagCGCCgGCa- -3' miRNA: 3'- uacCAGCUAUGGCUGGa----GCGGgUGcg -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 5196 | 0.7 | 0.314427 |
Target: 5'- --cGUCGAUauuGCCGGCUaccgUGCCCACGUc -3' miRNA: 3'- uacCAGCUA---UGGCUGGa---GCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 5454 | 0.7 | 0.306726 |
Target: 5'- -aGGUCGGUAUCGACCaUCaCgCCGCGg -3' miRNA: 3'- uaCCAGCUAUGGCUGG-AGcG-GGUGCg -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 6266 | 0.67 | 0.501761 |
Target: 5'- -cGGUUGAUcugcgcgcugggcagGCCGAacaggUCGCCCACGa -3' miRNA: 3'- uaCCAGCUA---------------UGGCUgg---AGCGGGUGCg -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 7069 | 0.66 | 0.572339 |
Target: 5'- -aGGUacuucaUGAcGCCGcgGCCUacccacggcgCGCCCACGCg -3' miRNA: 3'- uaCCA------GCUaUGGC--UGGA----------GCGGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 7626 | 0.67 | 0.508033 |
Target: 5'- gAUGGUCaGGggGCgCGG-CUCGaCCCACGCc -3' miRNA: 3'- -UACCAG-CUa-UG-GCUgGAGC-GGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 7823 | 0.67 | 0.49656 |
Target: 5'- uAUGGUCGAggcgcgGCUgcacgauGACCagGCgCACGCg -3' miRNA: 3'- -UACCAGCUa-----UGG-------CUGGagCGgGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 8375 | 0.74 | 0.177128 |
Target: 5'- -cGGcUCGAacCCGGCCUCGCgCugGCu -3' miRNA: 3'- uaCC-AGCUauGGCUGGAGCGgGugCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 8509 | 0.66 | 0.529172 |
Target: 5'- --cGUCGAUGCCcuuGAUgUCGCCgGCGa -3' miRNA: 3'- uacCAGCUAUGG---CUGgAGCGGgUGCg -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 8639 | 0.67 | 0.497598 |
Target: 5'- gGUGG-CGAggucGCCGGCCUUcaUCGCGCg -3' miRNA: 3'- -UACCaGCUa---UGGCUGGAGcgGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 8834 | 0.76 | 0.1236 |
Target: 5'- -cGGccUUGAUACCGuCCUCGCCgACGUa -3' miRNA: 3'- uaCC--AGCUAUGGCuGGAGCGGgUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 10000 | 0.69 | 0.363677 |
Target: 5'- -gGGUCGAaagUGCCGcgcgcccgGCCccCGCCCugGUa -3' miRNA: 3'- uaCCAGCU---AUGGC--------UGGa-GCGGGugCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 10111 | 0.69 | 0.390231 |
Target: 5'- -aGGUCGGUaguGCCuGuCCUCGUaccggCCACGCc -3' miRNA: 3'- uaCCAGCUA---UGG-CuGGAGCG-----GGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 10512 | 0.66 | 0.51856 |
Target: 5'- uUGaUCGAacUGCUGACCgcCGgCCACGCu -3' miRNA: 3'- uACcAGCU--AUGGCUGGa-GCgGGUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 10850 | 0.67 | 0.456881 |
Target: 5'- gGUGGUCGAgcagGCCcugcguGGCUUCGgUCgGCGCg -3' miRNA: 3'- -UACCAGCUa---UGG------CUGGAGC-GGgUGCG- -5' |
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26606 | 5' | -57.1 | NC_005357.1 | + | 11205 | 0.68 | 0.408624 |
Target: 5'- -cGGUCaAUGCCgcgcauGACCgccacguuccCGCCCACGCc -3' miRNA: 3'- uaCCAGcUAUGG------CUGGa---------GCGGGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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