miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 5' -57.1 NC_005357.1 + 41872 0.66 0.572339
Target:  5'- cAUGGUCGAgGCgUGGuuUUucagcgGCCCGCGCa -3'
miRNA:   3'- -UACCAGCUaUG-GCUggAG------CGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 41152 0.7 0.346683
Target:  5'- -gGGUCGAgggccgggaaUACCGGCgCUCGCCgGacgGCg -3'
miRNA:   3'- uaCCAGCU----------AUGGCUG-GAGCGGgUg--CG- -5'
26606 5' -57.1 NC_005357.1 + 37676 0.7 0.346683
Target:  5'- -cGGUCGAUAaaGACCagCGCCagaUugGCa -3'
miRNA:   3'- uaCCAGCUAUggCUGGa-GCGG---GugCG- -5'
26606 5' -57.1 NC_005357.1 + 36981 1.09 0.000525
Target:  5'- gAUGGUCGAUACCGACCUCGCCCACGCc -3'
miRNA:   3'- -UACCAGCUAUGGCUGGAGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 36856 0.67 0.497598
Target:  5'- cGUGGaguAUGCCGGCCUCGacaucgaagCCAUGCg -3'
miRNA:   3'- -UACCagcUAUGGCUGGAGCg--------GGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 36025 0.66 0.51856
Target:  5'- cAUGGgccgCGAcuacaccggGCCGGCCg-GCCUGCGCc -3'
miRNA:   3'- -UACCa---GCUa--------UGGCUGGagCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 35431 0.68 0.408624
Target:  5'- ----gCGA-GCCGACC-CGCUCGCGCg -3'
miRNA:   3'- uaccaGCUaUGGCUGGaGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 33815 0.73 0.208206
Target:  5'- -aGGgCG-UACCGGCCaCGCCUACGCc -3'
miRNA:   3'- uaCCaGCuAUGGCUGGaGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 33641 0.66 0.51856
Target:  5'- -cGG-CGcgGCCGACCcaucgUGCgCCGCGUg -3'
miRNA:   3'- uaCCaGCuaUGGCUGGa----GCG-GGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 32363 0.66 0.572339
Target:  5'- -cGGUCGccGCCGAggccCCggcCGCCCA-GCa -3'
miRNA:   3'- uaCCAGCuaUGGCU----GGa--GCGGGUgCG- -5'
26606 5' -57.1 NC_005357.1 + 32117 0.69 0.390231
Target:  5'- cUGGcCGcUGCCGACCUcgaCGCCCcCGa -3'
miRNA:   3'- uACCaGCuAUGGCUGGA---GCGGGuGCg -5'
26606 5' -57.1 NC_005357.1 + 31330 0.67 0.48726
Target:  5'- uUGGcCGcaGCCGACaaggUGCUCGCGCg -3'
miRNA:   3'- uACCaGCuaUGGCUGga--GCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 30565 0.68 0.418021
Target:  5'- cAUGGgCGAUAUUGGCgcggggUUCGCCCAgGCc -3'
miRNA:   3'- -UACCaGCUAUGGCUG------GAGCGGGUgCG- -5'
26606 5' -57.1 NC_005357.1 + 29331 0.67 0.477025
Target:  5'- gGUGG-CGGUcGCCGGCCaaguccUCGaaCCACGCg -3'
miRNA:   3'- -UACCaGCUA-UGGCUGG------AGCg-GGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 29286 0.66 0.572339
Target:  5'- cGUGGUaggcgaCGAacUGCUGGcCCUUGCCCA-GCa -3'
miRNA:   3'- -UACCA------GCU--AUGGCU-GGAGCGGGUgCG- -5'
26606 5' -57.1 NC_005357.1 + 28917 0.68 0.437203
Target:  5'- -cGGaCGGcaaACCGcuuACCUCGCCCaagGCGCg -3'
miRNA:   3'- uaCCaGCUa--UGGC---UGGAGCGGG---UGCG- -5'
26606 5' -57.1 NC_005357.1 + 28710 0.67 0.466897
Target:  5'- -aGGUCGAUGCUG-UCg-GCgCACGCg -3'
miRNA:   3'- uaCCAGCUAUGGCuGGagCGgGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 28662 0.74 0.167721
Target:  5'- -aGaUCGGUGCCGgcgGCCUCGCCaGCGCg -3'
miRNA:   3'- uaCcAGCUAUGGC---UGGAGCGGgUGCG- -5'
26606 5' -57.1 NC_005357.1 + 28483 0.67 0.470935
Target:  5'- aGUGGUCGAgcauccgcucggcauUGCCGAaCUCggucaucuGCCgGCGCu -3'
miRNA:   3'- -UACCAGCU---------------AUGGCUgGAG--------CGGgUGCG- -5'
26606 5' -57.1 NC_005357.1 + 28160 0.74 0.182005
Target:  5'- gGUGGUCag-AUCGACCacgccgUUGCCCACGCc -3'
miRNA:   3'- -UACCAGcuaUGGCUGG------AGCGGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.