miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26606 5' -57.1 NC_005357.1 + 12549 0.76 0.142138
Target:  5'- -gGcGUCGGUgaauuucuuGCCGGCCUCGCgCUGCGCg -3'
miRNA:   3'- uaC-CAGCUA---------UGGCUGGAGCG-GGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 12631 0.66 0.522795
Target:  5'- -cGGcaUCGAgcgcgagacagcguaUGCCGAaaUCUCGCgCACGCg -3'
miRNA:   3'- uaCC--AGCU---------------AUGGCU--GGAGCGgGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 12910 0.69 0.372388
Target:  5'- uUGG-CGAUGCgcuCGGCCgCGCCCauaACGCu -3'
miRNA:   3'- uACCaGCUAUG---GCUGGaGCGGG---UGCG- -5'
26606 5' -57.1 NC_005357.1 + 13395 0.76 0.127119
Target:  5'- -cGGUgGGUAUCGACCUgGCCgaaGCGCg -3'
miRNA:   3'- uaCCAgCUAUGGCUGGAgCGGg--UGCG- -5'
26606 5' -57.1 NC_005357.1 + 13487 0.74 0.167721
Target:  5'- cUGGgCGAUGCCGACCgCGCCUuuGgGCg -3'
miRNA:   3'- uACCaGCUAUGGCUGGaGCGGG--UgCG- -5'
26606 5' -57.1 NC_005357.1 + 14214 0.68 0.427548
Target:  5'- cGUGGUCGucggcgugGCCGACCUggacaaggCGCCgCACcuGCu -3'
miRNA:   3'- -UACCAGCua------UGGCUGGA--------GCGG-GUG--CG- -5'
26606 5' -57.1 NC_005357.1 + 14839 0.79 0.085414
Target:  5'- -aGGUCGAUGCCGuuggcgGCCagCGCCgCACGCu -3'
miRNA:   3'- uaCCAGCUAUGGC------UGGa-GCGG-GUGCG- -5'
26606 5' -57.1 NC_005357.1 + 14922 0.66 0.570158
Target:  5'- cUGGcCGGccucaagUGCCGACUgcgCGCCCAacucggcgaugcuCGCg -3'
miRNA:   3'- uACCaGCU-------AUGGCUGGa--GCGGGU-------------GCG- -5'
26606 5' -57.1 NC_005357.1 + 15032 0.66 0.572339
Target:  5'- -cGcGUUGGUGuuGGCgaUGCCCGCGUu -3'
miRNA:   3'- uaC-CAGCUAUggCUGgaGCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 15537 0.67 0.48726
Target:  5'- uAUGcaCGGUGCCGGCCUCcacGUCCAgGUc -3'
miRNA:   3'- -UACcaGCUAUGGCUGGAG---CGGGUgCG- -5'
26606 5' -57.1 NC_005357.1 + 16623 0.71 0.284493
Target:  5'- -cGGUgcagaucaaCGAUACCGAgCgCGCCgCGCGCa -3'
miRNA:   3'- uaCCA---------GCUAUGGCUgGaGCGG-GUGCG- -5'
26606 5' -57.1 NC_005357.1 + 17466 0.66 0.529172
Target:  5'- -cGcGUCGAguaCGACUUCGaCCC-CGCg -3'
miRNA:   3'- uaC-CAGCUaugGCUGGAGC-GGGuGCG- -5'
26606 5' -57.1 NC_005357.1 + 17613 0.71 0.27737
Target:  5'- --uGUCGAUACCGGCCUCGauguuugCCGCa- -3'
miRNA:   3'- uacCAGCUAUGGCUGGAGCg------GGUGcg -5'
26606 5' -57.1 NC_005357.1 + 17840 0.71 0.27737
Target:  5'- -gGGUUGAUGCCcGCCaccguggccucgUCGCCCAgGUa -3'
miRNA:   3'- uaCCAGCUAUGGcUGG------------AGCGGGUgCG- -5'
26606 5' -57.1 NC_005357.1 + 17858 0.71 0.27737
Target:  5'- -cGGccCGAccgugGCCGGCCUCGCcaucgCCGCGCu -3'
miRNA:   3'- uaCCa-GCUa----UGGCUGGAGCG-----GGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 18475 0.69 0.372388
Target:  5'- -cGGcaaAUGCCGACCUCGCCgGgCGUg -3'
miRNA:   3'- uaCCagcUAUGGCUGGAGCGGgU-GCG- -5'
26606 5' -57.1 NC_005357.1 + 18911 0.7 0.338402
Target:  5'- -aGGUCGAUGa-GGUCggCGCCCGCGCu -3'
miRNA:   3'- uaCCAGCUAUggCUGGa-GCGGGUGCG- -5'
26606 5' -57.1 NC_005357.1 + 20627 0.67 0.508033
Target:  5'- -aGGUCGGUGUCGGCCUgCGCUCGu-- -3'
miRNA:   3'- uaCCAGCUAUGGCUGGA-GCGGGUgcg -5'
26606 5' -57.1 NC_005357.1 + 20963 0.68 0.427548
Target:  5'- cAUGGUCGAgGCCaacauCCUgcCGCCCcCGCc -3'
miRNA:   3'- -UACCAGCUaUGGcu---GGA--GCGGGuGCG- -5'
26606 5' -57.1 NC_005357.1 + 21327 0.74 0.177128
Target:  5'- -gGGcUUGAUGCCGGCCaccgCGCCCAgGUu -3'
miRNA:   3'- uaCC-AGCUAUGGCUGGa---GCGGGUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.