miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26607 3' -60.2 NC_005357.1 + 37186 1.07 0.000331
Target:  5'- cCCGACCUGCCGGCCGAACUGCGCGAAc -3'
miRNA:   3'- -GGCUGGACGGCCGGCUUGACGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 17861 0.8 0.042355
Target:  5'- cCCGACCgugGCCGGCCucgccaucgccGcGCUGCGCGAc -3'
miRNA:   3'- -GGCUGGa--CGGCCGG-----------CuUGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 31019 0.76 0.079322
Target:  5'- aCgGGCUUGCCGGCCGAggcaaucgcgcggGCcaacgUGCGCGAAg -3'
miRNA:   3'- -GgCUGGACGGCCGGCU-------------UG-----ACGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 30629 0.72 0.146797
Target:  5'- gCGACCaGCCGGCgCGAAUgaggGCGCa-- -3'
miRNA:   3'- gGCUGGaCGGCCG-GCUUGa---CGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 40959 0.72 0.150848
Target:  5'- cCCGGCCUGCCaggaGGCCGccGACcGCGCc-- -3'
miRNA:   3'- -GGCUGGACGG----CCGGC--UUGaCGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 28230 0.72 0.150848
Target:  5'- aCGACCacgcGCgGGUCGGACUGCGCc-- -3'
miRNA:   3'- gGCUGGa---CGgCCGGCUUGACGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 38880 0.72 0.159257
Target:  5'- gCGGCgCgGuuGGCgGGACUGCGCGGu -3'
miRNA:   3'- gGCUG-GaCggCCGgCUUGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 13166 0.72 0.159257
Target:  5'- gUCGGCCagUGUCGGCCGcGCUGgGCGc- -3'
miRNA:   3'- -GGCUGG--ACGGCCGGCuUGACgCGCuu -5'
26607 3' -60.2 NC_005357.1 + 31945 0.72 0.163618
Target:  5'- aCGGCCcGUUcgGGCCGGuGCUGCGCGAc -3'
miRNA:   3'- gGCUGGaCGG--CCGGCU-UGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 36033 0.71 0.168086
Target:  5'- gCGACUacaccggGCCGGCCGGcCUGCGCc-- -3'
miRNA:   3'- gGCUGGa------CGGCCGGCUuGACGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 11144 0.71 0.177351
Target:  5'- uUCGGCCUGCUgcugGGCCGc-CUGCGCa-- -3'
miRNA:   3'- -GGCUGGACGG----CCGGCuuGACGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 34480 0.71 0.177351
Target:  5'- gCCGACCUGaaauaUGGCCGug--GCGUGAAg -3'
miRNA:   3'- -GGCUGGACg----GCCGGCuugaCGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 14911 0.71 0.182152
Target:  5'- gCGAUCUGCUgcuGGCCGGccucaagugccgACUGCGCGc- -3'
miRNA:   3'- gGCUGGACGG---CCGGCU------------UGACGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 42076 0.71 0.187067
Target:  5'- uCgGGCCUGgCGGaCGGccuGCUGCGCGAc -3'
miRNA:   3'- -GgCUGGACgGCCgGCU---UGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 10918 0.7 0.199343
Target:  5'- gCGACCUGCCcGCCGGuuuGCagggccucgggcaguUGCGCGGc -3'
miRNA:   3'- gGCUGGACGGcCGGCU---UG---------------ACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 41116 0.7 0.207912
Target:  5'- gUCGGCCUGgUGGCCGucGCccuggGCGCGGc -3'
miRNA:   3'- -GGCUGGACgGCCGGCu-UGa----CGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 12846 0.7 0.219068
Target:  5'- aCCGcgcGCCUggGCgCGGCCGAcCUGaCGCGAu -3'
miRNA:   3'- -GGC---UGGA--CG-GCCGGCUuGAC-GCGCUu -5'
26607 3' -60.2 NC_005357.1 + 21190 0.7 0.219068
Target:  5'- gCGGCCUGCU-GCUGGuCUGCGCGu- -3'
miRNA:   3'- gGCUGGACGGcCGGCUuGACGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 12556 0.7 0.219068
Target:  5'- gUGAauuuCUUGCCGGCCucgcGCUGCGCGGc -3'
miRNA:   3'- gGCU----GGACGGCCGGcu--UGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 771 0.69 0.23615
Target:  5'- aCCGuCUUGCCGGUCaGAucgggccGCUGCGCa-- -3'
miRNA:   3'- -GGCuGGACGGCCGG-CU-------UGACGCGcuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.