miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26607 3' -60.2 NC_005357.1 + 378 0.67 0.351716
Target:  5'- uUGGCCUGCCgauugagcgcGGCC-AGC-GCGCGAc -3'
miRNA:   3'- gGCUGGACGG----------CCGGcUUGaCGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 518 0.69 0.236758
Target:  5'- -gGGCCaucGCUGGCCGAAUaccucggacgUGCGCGGg -3'
miRNA:   3'- ggCUGGa--CGGCCGGCUUG----------ACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 771 0.69 0.23615
Target:  5'- aCCGuCUUGCCGGUCaGAucgggccGCUGCGCa-- -3'
miRNA:   3'- -GGCuGGACGGCCGG-CU-------UGACGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 1881 0.68 0.289796
Target:  5'- gUGGCCggcGCUGGCCGGG-UGgGCGAAc -3'
miRNA:   3'- gGCUGGa--CGGCCGGCUUgACgCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 6616 0.66 0.403975
Target:  5'- aUGACCaGCgGGCgCGuggcGCUGCGCGc- -3'
miRNA:   3'- gGCUGGaCGgCCG-GCu---UGACGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 7203 0.67 0.327443
Target:  5'- -gGGCUUGCCa-UCGGACUGCGUGAu -3'
miRNA:   3'- ggCUGGACGGccGGCUUGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 7708 0.67 0.319633
Target:  5'- gCCGGCUUGCCGa-UGAACUGCaGCGc- -3'
miRNA:   3'- -GGCUGGACGGCcgGCUUGACG-CGCuu -5'
26607 3' -60.2 NC_005357.1 + 9200 0.66 0.360085
Target:  5'- uUGGCCUGCuCGGCgGcGCgGCGCa-- -3'
miRNA:   3'- gGCUGGACG-GCCGgCuUGaCGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 9314 0.66 0.403975
Target:  5'- gCGACCUGgCGG-CGcACgucgGCGCGGc -3'
miRNA:   3'- gGCUGGACgGCCgGCuUGa---CGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 10918 0.7 0.199343
Target:  5'- gCGACCUGCCcGCCGGuuuGCagggccucgggcaguUGCGCGGc -3'
miRNA:   3'- gGCUGGACGGcCGGCU---UG---------------ACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 11144 0.71 0.177351
Target:  5'- uUCGGCCUGCUgcugGGCCGc-CUGCGCa-- -3'
miRNA:   3'- -GGCUGGACGG----CCGGCuuGACGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 11837 0.66 0.394929
Target:  5'- aCCGGCCgcGCCgcGGuuGGcCUGgGCGAAc -3'
miRNA:   3'- -GGCUGGa-CGG--CCggCUuGACgCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 12556 0.7 0.219068
Target:  5'- gUGAauuuCUUGCCGGCCucgcGCUGCGCGGc -3'
miRNA:   3'- gGCU----GGACGGCCGGcu--UGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 12846 0.7 0.219068
Target:  5'- aCCGcgcGCCUggGCgCGGCCGAcCUGaCGCGAu -3'
miRNA:   3'- -GGC---UGGA--CG-GCCGGCUuGAC-GCGCUu -5'
26607 3' -60.2 NC_005357.1 + 13119 0.66 0.403975
Target:  5'- uCCGGgUUGCCGGCCag---GCGUGGGu -3'
miRNA:   3'- -GGCUgGACGGCCGGcuugaCGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 13166 0.72 0.159257
Target:  5'- gUCGGCCagUGUCGGCCGcGCUGgGCGc- -3'
miRNA:   3'- -GGCUGG--ACGGCCGGCuUGACgCGCuu -5'
26607 3' -60.2 NC_005357.1 + 13844 0.68 0.297045
Target:  5'- aCCGACaccacgCUGCCgguGGCCGAcgUGCGCGc- -3'
miRNA:   3'- -GGCUG------GACGG---CCGGCUugACGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 14540 0.66 0.36093
Target:  5'- gCGACgUGCUGGgCGAGCacgccaagauggcgaGCGCGGAc -3'
miRNA:   3'- gGCUGgACGGCCgGCUUGa--------------CGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 14911 0.71 0.182152
Target:  5'- gCGAUCUGCUgcuGGCCGGccucaagugccgACUGCGCGc- -3'
miRNA:   3'- gGCUGGACGG---CCGGCU------------UGACGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 14996 0.66 0.360085
Target:  5'- -gGGCCUG-CGGCCGccggGCGCGGu -3'
miRNA:   3'- ggCUGGACgGCCGGCuugaCGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.