miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26607 3' -60.2 NC_005357.1 + 11837 0.66 0.394929
Target:  5'- aCCGGCCgcGCCgcGGuuGGcCUGgGCGAAc -3'
miRNA:   3'- -GGCUGGa-CGG--CCggCUuGACgCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 26270 0.69 0.262188
Target:  5'- gCCGGCCUgGUCGGCuCGcGCaucgcGCGCGAu -3'
miRNA:   3'- -GGCUGGA-CGGCCG-GCuUGa----CGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 37438 0.68 0.282687
Target:  5'- gCCGACCUGCUGuucGCCaacgucaugGAACUgaccagcaGCGCGAu -3'
miRNA:   3'- -GGCUGGACGGC---CGG---------CUUGA--------CGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 36080 0.68 0.282687
Target:  5'- cCCGGCCUuCgGGCCGGGCgcuuuggcugGgGCGGAa -3'
miRNA:   3'- -GGCUGGAcGgCCGGCUUGa---------CgCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 35952 0.67 0.319633
Target:  5'- gCgGGCCUGCgCGGCgugcaGuucCUGCGCGAc -3'
miRNA:   3'- -GgCUGGACG-GCCGg----Cuu-GACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 28556 0.67 0.319633
Target:  5'- gCGGCC-GCCGGCCaucGCgGCGCGc- -3'
miRNA:   3'- gGCUGGaCGGCCGGcu-UGaCGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 36692 0.67 0.327443
Target:  5'- cCCGGCgC-GCUGGgCGAuCUGUGCGAc -3'
miRNA:   3'- -GGCUG-GaCGGCCgGCUuGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 9200 0.66 0.360085
Target:  5'- uUGGCCUGCuCGGCgGcGCgGCGCa-- -3'
miRNA:   3'- gGCUGGACG-GCCGgCuUGaCGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 32919 0.66 0.360085
Target:  5'- aCGGCCUGCaCGGCU--GCUGUucggccaggGCGAc -3'
miRNA:   3'- gGCUGGACG-GCCGGcuUGACG---------CGCUu -5'
26607 3' -60.2 NC_005357.1 + 21190 0.7 0.219068
Target:  5'- gCGGCCUGCU-GCUGGuCUGCGCGu- -3'
miRNA:   3'- gGCUGGACGGcCGGCUuGACGCGCuu -5'
26607 3' -60.2 NC_005357.1 + 12556 0.7 0.219068
Target:  5'- gUGAauuuCUUGCCGGCCucgcGCUGCGCGGc -3'
miRNA:   3'- gGCU----GGACGGCCGGcu--UGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 10918 0.7 0.199343
Target:  5'- gCGACCUGCCcGCCGGuuuGCagggccucgggcaguUGCGCGGc -3'
miRNA:   3'- gGCUGGACGGcCGGCU---UG---------------ACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 31019 0.76 0.079322
Target:  5'- aCgGGCUUGCCGGCCGAggcaaucgcgcggGCcaacgUGCGCGAAg -3'
miRNA:   3'- -GgCUGGACGGCCGGCU-------------UG-----ACGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 30629 0.72 0.146797
Target:  5'- gCGACCaGCCGGCgCGAAUgaggGCGCa-- -3'
miRNA:   3'- gGCUGGaCGGCCG-GCUUGa---CGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 28230 0.72 0.150848
Target:  5'- aCGACCacgcGCgGGUCGGACUGCGCc-- -3'
miRNA:   3'- gGCUGGa---CGgCCGGCUUGACGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 13166 0.72 0.159257
Target:  5'- gUCGGCCagUGUCGGCCGcGCUGgGCGc- -3'
miRNA:   3'- -GGCUGG--ACGGCCGGCuUGACgCGCuu -5'
26607 3' -60.2 NC_005357.1 + 38880 0.72 0.159257
Target:  5'- gCGGCgCgGuuGGCgGGACUGCGCGGu -3'
miRNA:   3'- gGCUG-GaCggCCGgCUUGACGCGCUu -5'
26607 3' -60.2 NC_005357.1 + 11144 0.71 0.177351
Target:  5'- uUCGGCCUGCUgcugGGCCGc-CUGCGCa-- -3'
miRNA:   3'- -GGCUGGACGG----CCGGCuuGACGCGcuu -5'
26607 3' -60.2 NC_005357.1 + 34480 0.71 0.177351
Target:  5'- gCCGACCUGaaauaUGGCCGug--GCGUGAAg -3'
miRNA:   3'- -GGCUGGACg----GCCGGCuugaCGCGCUU- -5'
26607 3' -60.2 NC_005357.1 + 14911 0.71 0.182152
Target:  5'- gCGAUCUGCUgcuGGCCGGccucaagugccgACUGCGCGc- -3'
miRNA:   3'- gGCUGGACGG---CCGGCU------------UGACGCGCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.