Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26608 | 3' | -54.2 | NC_005357.1 | + | 32094 | 0.7 | 0.473083 |
Target: 5'- aCACGccGCAG--CGACGGCuaCGGCCu -3' miRNA: 3'- -GUGCaaCGUCaaGUUGCCGcgGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 31367 | 0.69 | 0.515527 |
Target: 5'- aCACGUUcgaGCAGUUCGucgccaauGCGGCcGagaaCGGCCc -3' miRNA: 3'- -GUGCAA---CGUCAAGU--------UGCCG-Cg---GUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 30153 | 0.67 | 0.613354 |
Target: 5'- cCGCGUcggacaucagcgGCAGU----UGGCGCCAGUCg -3' miRNA: 3'- -GUGCAa-----------CGUCAaguuGCCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 29319 | 0.69 | 0.483535 |
Target: 5'- gCACuucaagGCGGU--GGCGGuCGCCGGCCa -3' miRNA: 3'- -GUGcaa---CGUCAagUUGCC-GCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 28648 | 0.68 | 0.593028 |
Target: 5'- cCGCGc-GCAGUgccaGAuCGGUGCCGGCg -3' miRNA: 3'- -GUGCaaCGUCAag--UU-GCCGCGGUCGg -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 28528 | 0.7 | 0.449487 |
Target: 5'- gGCGcUGCuuGUUgAACGGCacgaccuugcggccGCCGGCCa -3' miRNA: 3'- gUGCaACGu-CAAgUUGCCG--------------CGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 28388 | 0.71 | 0.393964 |
Target: 5'- -gUGUUcCAGUUCGacgccggcggcGCGGCGCCAGUa -3' miRNA: 3'- guGCAAcGUCAAGU-----------UGCCGCGGUCGg -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 28186 | 0.67 | 0.615618 |
Target: 5'- cCACGcccaGCAGgu--GCGGCGCCuuguccaggucGGCCa -3' miRNA: 3'- -GUGCaa--CGUCaaguUGCCGCGG-----------UCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 28102 | 0.69 | 0.504763 |
Target: 5'- gGCccgGCAGUUCAgccaagGCGcGCGCCAGUUc -3' miRNA: 3'- gUGcaaCGUCAAGU------UGC-CGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 27827 | 0.74 | 0.250026 |
Target: 5'- gCGCGcUGCccg-CggUGGCGCCGGCCg -3' miRNA: 3'- -GUGCaACGucaaGuuGCCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 27584 | 0.66 | 0.683406 |
Target: 5'- gCACcg-GCAGca-GGCGGCGCCAGa- -3' miRNA: 3'- -GUGcaaCGUCaagUUGCCGCGGUCgg -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 27321 | 0.66 | 0.716755 |
Target: 5'- cCugGUagGCAGcuauuACGGCGCgCGGUCg -3' miRNA: 3'- -GugCAa-CGUCaagu-UGCCGCG-GUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 25985 | 0.67 | 0.62694 |
Target: 5'- cUACGacGCcguGUUCAACGcCGCCGGCg -3' miRNA: 3'- -GUGCaaCGu--CAAGUUGCcGCGGUCGg -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 25597 | 0.67 | 0.649589 |
Target: 5'- uGCGgcccagGCAGUggCAaccacggcggcGCGGuCGCCAGCa -3' miRNA: 3'- gUGCaa----CGUCAa-GU-----------UGCC-GCGGUCGg -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 25490 | 0.69 | 0.537323 |
Target: 5'- gCACGcUGC---UgGACGGCGCCGuGCCc -3' miRNA: 3'- -GUGCaACGucaAgUUGCCGCGGU-CGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 25218 | 0.66 | 0.683406 |
Target: 5'- cCGCGUccUGCAacgcuccUUCGGCGGCGgcgaaaUCAGCCc -3' miRNA: 3'- -GUGCA--ACGUc------AAGUUGCCGC------GGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 24693 | 0.68 | 0.581781 |
Target: 5'- cCACGcccagGCuGUcCAuCGGUGCCAGUCg -3' miRNA: 3'- -GUGCaa---CGuCAaGUuGCCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 24546 | 0.71 | 0.403382 |
Target: 5'- cCGCGUggucgcGCAGcgcggCGAUGGCgagGCCGGCCa -3' miRNA: 3'- -GUGCAa-----CGUCaa---GUUGCCG---CGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 24295 | 0.71 | 0.393964 |
Target: 5'- cCACGUggggGCGGUgagguCGGCGagCAGCCg -3' miRNA: 3'- -GUGCAa---CGUCAaguu-GCCGCg-GUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 23992 | 0.68 | 0.593028 |
Target: 5'- uCACGUuuucggUGCAGgacUCGGCGGacaaCGCCAccuucGCCg -3' miRNA: 3'- -GUGCA------ACGUCa--AGUUGCC----GCGGU-----CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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