Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26608 | 3' | -54.2 | NC_005357.1 | + | 42314 | 0.67 | 0.638267 |
Target: 5'- aCGCGaaGUGGUUgGACGGCGCgCAGa- -3' miRNA: 3'- -GUGCaaCGUCAAgUUGCCGCG-GUCgg -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 42088 | 0.66 | 0.683406 |
Target: 5'- gACGgccUGCuGcgCGACGccacCGCCAGCCu -3' miRNA: 3'- gUGCa--ACGuCaaGUUGCc---GCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 41429 | 0.71 | 0.384691 |
Target: 5'- gACGcUGCGGUgaaCcACGGCaCCGGCCa -3' miRNA: 3'- gUGCaACGUCAa--GuUGCCGcGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 41366 | 0.67 | 0.648458 |
Target: 5'- gCGCGUUacuggacGcCGGUUC-GCGGCgacaugcugccGCCGGCCg -3' miRNA: 3'- -GUGCAA-------C-GUCAAGuUGCCG-----------CGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 40071 | 0.66 | 0.660893 |
Target: 5'- cCACG-UGCAGgcCGaauuGCGGCGCaCGcgcGCCa -3' miRNA: 3'- -GUGCaACGUCaaGU----UGCCGCG-GU---CGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 38136 | 0.69 | 0.537323 |
Target: 5'- gCugG-UGCAGUUCAccgccgacACGGCcaucaccauGCCGGCg -3' miRNA: 3'- -GugCaACGUCAAGU--------UGCCG---------CGGUCGg -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 38032 | 0.68 | 0.593028 |
Target: 5'- gCACGcucaagGCccGGcgCGACGGCGCCuGGCUg -3' miRNA: 3'- -GUGCaa----CG--UCaaGUUGCCGCGG-UCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 37587 | 0.67 | 0.60431 |
Target: 5'- gCugGccGCuuuccGUgaauucgaCGACGGCGCCGGCCc -3' miRNA: 3'- -GugCaaCGu----CAa-------GUUGCCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 37304 | 1.12 | 0.000506 |
Target: 5'- gCACGUUGCAGUUCAACGGCGCCAGCCg -3' miRNA: 3'- -GUGCAACGUCAAGUUGCCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 36837 | 0.66 | 0.716755 |
Target: 5'- aACGagGCGGacaUCGacACGGUGgCGGCCa -3' miRNA: 3'- gUGCaaCGUCa--AGU--UGCCGCgGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 35960 | 0.7 | 0.43247 |
Target: 5'- gCGCGgcgUGCAGUUCcugcgcGACGGCGac-GCCu -3' miRNA: 3'- -GUGCa--ACGUCAAG------UUGCCGCgguCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 35116 | 0.79 | 0.132123 |
Target: 5'- uGCGUUcGCAGaccaUCGACGGCGCCAuCCg -3' miRNA: 3'- gUGCAA-CGUCa---AGUUGCCGCGGUcGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 34719 | 0.84 | 0.056368 |
Target: 5'- uGCGcUGCAGUUCAuCGGCaaGCCGGCCg -3' miRNA: 3'- gUGCaACGUCAAGUuGCCG--CGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 34713 | 0.66 | 0.710138 |
Target: 5'- aGCGgUGCAGgcggugugggaucacUUCGAgGGCuaCCGGCCg -3' miRNA: 3'- gUGCaACGUC---------------AAGUUgCCGc-GGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 34652 | 0.66 | 0.660893 |
Target: 5'- uCGCcucGCAGggCGAaGGCGCgAGCCu -3' miRNA: 3'- -GUGcaaCGUCaaGUUgCCGCGgUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 33743 | 0.68 | 0.593028 |
Target: 5'- gCGCGgcGCAcaccUgGGCGGCGCagCAGCCg -3' miRNA: 3'- -GUGCaaCGUca--AgUUGCCGCG--GUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 33686 | 0.66 | 0.69459 |
Target: 5'- cCAUGUUGaCGGU--AGCGccGCGCCcGCCg -3' miRNA: 3'- -GUGCAAC-GUCAagUUGC--CGCGGuCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 33232 | 0.71 | 0.393964 |
Target: 5'- cCGCGccgccgaGCAGgccaacgUCGACGGCGCCAaguugucgcuGCCg -3' miRNA: 3'- -GUGCaa-----CGUCa------AGUUGCCGCGGU----------CGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 33174 | 0.69 | 0.537323 |
Target: 5'- --aGUUGCGGaa-GugGGCGCCcucggcacGGCCa -3' miRNA: 3'- gugCAACGUCaagUugCCGCGG--------UCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 32516 | 0.66 | 0.716755 |
Target: 5'- cCGCGcccgUGCAGgcUggUGaUGCCGGCCa -3' miRNA: 3'- -GUGCa---ACGUCaaGuuGCcGCGGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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