Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26608 | 3' | -54.2 | NC_005357.1 | + | 37304 | 1.12 | 0.000506 |
Target: 5'- gCACGUUGCAGUUCAACGGCGCCAGCCg -3' miRNA: 3'- -GUGCAACGUCAAGUUGCCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 34719 | 0.84 | 0.056368 |
Target: 5'- uGCGcUGCAGUUCAuCGGCaaGCCGGCCg -3' miRNA: 3'- gUGCaACGUCAAGUuGCCG--CGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 35116 | 0.79 | 0.132123 |
Target: 5'- uGCGUUcGCAGaccaUCGACGGCGCCAuCCg -3' miRNA: 3'- gUGCAA-CGUCa---AGUUGCCGCGGUcGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 21679 | 0.78 | 0.143944 |
Target: 5'- gCGCGgcGCAGcgCcucuACGGCGCCAGCa -3' miRNA: 3'- -GUGCaaCGUCaaGu---UGCCGCGGUCGg -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 18459 | 0.76 | 0.206997 |
Target: 5'- gACGgucGCGGcgcCGGCGGCGUCGGCCg -3' miRNA: 3'- gUGCaa-CGUCaa-GUUGCCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 3811 | 0.75 | 0.230742 |
Target: 5'- -uCGUUGUAGUUgGGCaGGCGCUuGCCg -3' miRNA: 3'- guGCAACGUCAAgUUG-CCGCGGuCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 16823 | 0.75 | 0.243454 |
Target: 5'- gGCGgcGCAGUUCAcGCGGCGCaUAGUUc -3' miRNA: 3'- gUGCaaCGUCAAGU-UGCCGCG-GUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 27827 | 0.74 | 0.250026 |
Target: 5'- gCGCGcUGCccg-CggUGGCGCCGGCCg -3' miRNA: 3'- -GUGCaACGucaaGuuGCCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 12294 | 0.74 | 0.270621 |
Target: 5'- aCGCGgUGCAGgcCGGCGGCGUguucuggcgCGGCCu -3' miRNA: 3'- -GUGCaACGUCaaGUUGCCGCG---------GUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 1851 | 0.74 | 0.270621 |
Target: 5'- gAUGUUGCcgccgucuugcaGGUUCAGCccguggccGGCGCUGGCCg -3' miRNA: 3'- gUGCAACG------------UCAAGUUG--------CCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 6197 | 0.74 | 0.277783 |
Target: 5'- aGCGuUUGCAGgu-GACGGCGCgCGGCUc -3' miRNA: 3'- gUGC-AACGUCaagUUGCCGCG-GUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 2825 | 0.73 | 0.285095 |
Target: 5'- cCAgGUgcucGCGGccacgcgCAGCGGCGCCAGCa -3' miRNA: 3'- -GUgCAa---CGUCaa-----GUUGCCGCGGUCGg -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 16569 | 0.72 | 0.34907 |
Target: 5'- gACGUUGUAGcgCGAC-GCGCCggacgaGGCCg -3' miRNA: 3'- gUGCAACGUCaaGUUGcCGCGG------UCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 17919 | 0.72 | 0.34907 |
Target: 5'- gACGUgauCGG--CGugGGCGCCAGCCc -3' miRNA: 3'- gUGCAac-GUCaaGUugCCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 5072 | 0.71 | 0.383771 |
Target: 5'- cCGCGgcagguuUUGCGGUUgGAacaGGCgGCCGGCCc -3' miRNA: 3'- -GUGC-------AACGUCAAgUUg--CCG-CGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 41429 | 0.71 | 0.384691 |
Target: 5'- gACGcUGCGGUgaaCcACGGCaCCGGCCa -3' miRNA: 3'- gUGCaACGUCAa--GuUGCCGcGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 15155 | 0.71 | 0.388383 |
Target: 5'- gCGCGgcgaacUGCGGUUCAuugccucggccaagaGCcuggGGCGCCGGCUg -3' miRNA: 3'- -GUGCa-----ACGUCAAGU---------------UG----CCGCGGUCGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 33232 | 0.71 | 0.393964 |
Target: 5'- cCGCGccgccgaGCAGgccaacgUCGACGGCGCCAaguugucgcuGCCg -3' miRNA: 3'- -GUGCaa-----CGUCa------AGUUGCCGCGGU----------CGG- -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 28388 | 0.71 | 0.393964 |
Target: 5'- -gUGUUcCAGUUCGacgccggcggcGCGGCGCCAGUa -3' miRNA: 3'- guGCAAcGUCAAGU-----------UGCCGCGGUCGg -5' |
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26608 | 3' | -54.2 | NC_005357.1 | + | 24295 | 0.71 | 0.393964 |
Target: 5'- cCACGUggggGCGGUgagguCGGCGagCAGCCg -3' miRNA: 3'- -GUGCAa---CGUCAaguu-GCCGCg-GUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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