miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26608 3' -54.2 NC_005357.1 + 15555 0.69 0.515527
Target:  5'- cCACGUc-CAGgUCAAUGGCGCC-GUCa -3'
miRNA:   3'- -GUGCAacGUCaAGUUGCCGCGGuCGG- -5'
26608 3' -54.2 NC_005357.1 + 673 0.71 0.422637
Target:  5'- cCACcagGCcgccuaCGGCGGCGCCGGCCg -3'
miRNA:   3'- -GUGcaaCGucaa--GUUGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 20619 0.7 0.43247
Target:  5'- gGCGUcGCAGgu---CGGUGUCGGCCu -3'
miRNA:   3'- gUGCAaCGUCaaguuGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 35960 0.7 0.43247
Target:  5'- gCGCGgcgUGCAGUUCcugcgcGACGGCGac-GCCu -3'
miRNA:   3'- -GUGCa--ACGUCAAG------UUGCCGCgguCGG- -5'
26608 3' -54.2 NC_005357.1 + 22240 0.7 0.43247
Target:  5'- cCugGUUGuCGGccgCGAUGGCguauucGCCGGCCg -3'
miRNA:   3'- -GugCAAC-GUCaa-GUUGCCG------CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 9215 0.7 0.442435
Target:  5'- gCGCGgcGCAcGUUCuGCGGCGCgccCGGCg -3'
miRNA:   3'- -GUGCaaCGU-CAAGuUGCCGCG---GUCGg -5'
26608 3' -54.2 NC_005357.1 + 28528 0.7 0.449487
Target:  5'- gGCGcUGCuuGUUgAACGGCacgaccuugcggccGCCGGCCa -3'
miRNA:   3'- gUGCaACGu-CAAgUUGCCG--------------CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 29319 0.69 0.483535
Target:  5'- gCACuucaagGCGGU--GGCGGuCGCCGGCCa -3'
miRNA:   3'- -GUGcaa---CGUCAagUUGCC-GCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 4320 0.69 0.494097
Target:  5'- -cCGUUGaccuccaCGAUGGUGCCAGCCu -3'
miRNA:   3'- guGCAACgucaa--GUUGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 16744 0.71 0.422637
Target:  5'- gACGUgGCGGUcacgcUCGugGGCG-UAGCCa -3'
miRNA:   3'- gUGCAaCGUCA-----AGUugCCGCgGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 15517 0.71 0.422637
Target:  5'- uGCGgugauggGCAGgcCGauaugcACGGUGCCGGCCu -3'
miRNA:   3'- gUGCaa-----CGUCaaGU------UGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 24546 0.71 0.403382
Target:  5'- cCGCGUggucgcGCAGcgcggCGAUGGCgagGCCGGCCa -3'
miRNA:   3'- -GUGCAa-----CGUCaa---GUUGCCG---CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 34719 0.84 0.056368
Target:  5'- uGCGcUGCAGUUCAuCGGCaaGCCGGCCg -3'
miRNA:   3'- gUGCaACGUCAAGUuGCCG--CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 18459 0.76 0.206997
Target:  5'- gACGgucGCGGcgcCGGCGGCGUCGGCCg -3'
miRNA:   3'- gUGCaa-CGUCaa-GUUGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 3811 0.75 0.230742
Target:  5'- -uCGUUGUAGUUgGGCaGGCGCUuGCCg -3'
miRNA:   3'- guGCAACGUCAAgUUG-CCGCGGuCGG- -5'
26608 3' -54.2 NC_005357.1 + 16823 0.75 0.243454
Target:  5'- gGCGgcGCAGUUCAcGCGGCGCaUAGUUc -3'
miRNA:   3'- gUGCaaCGUCAAGU-UGCCGCG-GUCGG- -5'
26608 3' -54.2 NC_005357.1 + 27827 0.74 0.250026
Target:  5'- gCGCGcUGCccg-CggUGGCGCCGGCCg -3'
miRNA:   3'- -GUGCaACGucaaGuuGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 16569 0.72 0.34907
Target:  5'- gACGUUGUAGcgCGAC-GCGCCggacgaGGCCg -3'
miRNA:   3'- gUGCAACGUCaaGUUGcCGCGG------UCGG- -5'
26608 3' -54.2 NC_005357.1 + 24295 0.71 0.393964
Target:  5'- cCACGUggggGCGGUgagguCGGCGagCAGCCg -3'
miRNA:   3'- -GUGCAa---CGUCAaguu-GCCGCg-GUCGG- -5'
26608 3' -54.2 NC_005357.1 + 28388 0.71 0.393964
Target:  5'- -gUGUUcCAGUUCGacgccggcggcGCGGCGCCAGUa -3'
miRNA:   3'- guGCAAcGUCAAGU-----------UGCCGCGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.