miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26608 3' -54.2 NC_005357.1 + 673 0.71 0.422637
Target:  5'- cCACcagGCcgccuaCGGCGGCGCCGGCCg -3'
miRNA:   3'- -GUGcaaCGucaa--GUUGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 1460 0.66 0.683406
Target:  5'- gACGgcGCGG-UCGGCGGCcuccugGCaGGCCg -3'
miRNA:   3'- gUGCaaCGUCaAGUUGCCG------CGgUCGG- -5'
26608 3' -54.2 NC_005357.1 + 1851 0.74 0.270621
Target:  5'- gAUGUUGCcgccgucuugcaGGUUCAGCccguggccGGCGCUGGCCg -3'
miRNA:   3'- gUGCAACG------------UCAAGUUG--------CCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 2230 0.68 0.581781
Target:  5'- cCACGc-GCAGca-GGCGGCGCgUGGCCg -3'
miRNA:   3'- -GUGCaaCGUCaagUUGCCGCG-GUCGG- -5'
26608 3' -54.2 NC_005357.1 + 2825 0.73 0.285095
Target:  5'- cCAgGUgcucGCGGccacgcgCAGCGGCGCCAGCa -3'
miRNA:   3'- -GUgCAa---CGUCaa-----GUUGCCGCGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 3535 0.67 0.649589
Target:  5'- gACG-UGCcGUUCca-GGCGCC-GCCg -3'
miRNA:   3'- gUGCaACGuCAAGuugCCGCGGuCGG- -5'
26608 3' -54.2 NC_005357.1 + 3811 0.75 0.230742
Target:  5'- -uCGUUGUAGUUgGGCaGGCGCUuGCCg -3'
miRNA:   3'- guGCAACGUCAAgUUG-CCGCGGuCGG- -5'
26608 3' -54.2 NC_005357.1 + 4247 0.68 0.570579
Target:  5'- gAUGgcGUAGU----CGGUGCCGGCCg -3'
miRNA:   3'- gUGCaaCGUCAaguuGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 4320 0.69 0.494097
Target:  5'- -cCGUUGaccuccaCGAUGGUGCCAGCCu -3'
miRNA:   3'- guGCAACgucaa--GUUGCCGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 4361 0.68 0.570579
Target:  5'- uGCGUUGcCGGUgcgcgugaaggCGACGGCcgacuuGUCGGCCu -3'
miRNA:   3'- gUGCAAC-GUCAa----------GUUGCCG------CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 5072 0.71 0.383771
Target:  5'- cCGCGgcagguuUUGCGGUUgGAacaGGCgGCCGGCCc -3'
miRNA:   3'- -GUGC-------AACGUCAAgUUg--CCG-CGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 5290 0.66 0.705711
Target:  5'- gGCGUUGuCGGccacggcgUCGAUauuuuccaGGuCGCCGGCCa -3'
miRNA:   3'- gUGCAAC-GUCa-------AGUUG--------CC-GCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 5428 0.67 0.638267
Target:  5'- cCACGgcGCGGau-GGCGGCGUgGGCg -3'
miRNA:   3'- -GUGCaaCGUCaagUUGCCGCGgUCGg -5'
26608 3' -54.2 NC_005357.1 + 5562 0.67 0.638267
Target:  5'- cCACG--GUA--UCGACGGCGCCaacgcuGGCCg -3'
miRNA:   3'- -GUGCaaCGUcaAGUUGCCGCGG------UCGG- -5'
26608 3' -54.2 NC_005357.1 + 6197 0.74 0.277783
Target:  5'- aGCGuUUGCAGgu-GACGGCGCgCGGCUc -3'
miRNA:   3'- gUGC-AACGUCaagUUGCCGCG-GUCGG- -5'
26608 3' -54.2 NC_005357.1 + 6819 0.66 0.683406
Target:  5'- aCACGgcGCGGguuucgUCGuugcccuCGGCGaCGGCCu -3'
miRNA:   3'- -GUGCaaCGUCa-----AGUu------GCCGCgGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 7245 0.66 0.660893
Target:  5'- cCACuGgcGCGGgcCGAUGuCGCCGGCCu -3'
miRNA:   3'- -GUG-CaaCGUCaaGUUGCcGCGGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 7759 0.66 0.660893
Target:  5'- aGCGaUUGCAGcacCGGCGcgaucuGCGCCGGCg -3'
miRNA:   3'- gUGC-AACGUCaa-GUUGC------CGCGGUCGg -5'
26608 3' -54.2 NC_005357.1 + 8113 0.66 0.660893
Target:  5'- gCACGUgcucgGCcauUUCGGCGGUGacuucCCAGCCc -3'
miRNA:   3'- -GUGCAa----CGuc-AAGUUGCCGC-----GGUCGG- -5'
26608 3' -54.2 NC_005357.1 + 8209 0.66 0.716755
Target:  5'- gCACGgccucGUAGUcgcgcuggUCGGCGGCcGUCAGCa -3'
miRNA:   3'- -GUGCaa---CGUCA--------AGUUGCCG-CGGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.