Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 29678 | 0.66 | 0.317711 |
Target: 5'- aGGGCgCGGCCGUgUGUUUgaaAAUCGgAa -3' miRNA: 3'- aCCCG-GCCGGCGgACAAGg--UUGGCgU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 13465 | 0.66 | 0.317711 |
Target: 5'- cGGGCgCGGUgucgggcaUGaCCUGggcgaugCCGACCGCGc -3' miRNA: 3'- aCCCG-GCCG--------GC-GGACaa-----GGUUGGCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 7168 | 0.66 | 0.317711 |
Target: 5'- aGGGCCGGgCGCUUGUcggaUUCGGggGCGa -3' miRNA: 3'- aCCCGGCCgGCGGACA----AGGUUggCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 22797 | 0.66 | 0.313142 |
Target: 5'- cGGGCCGGUCaGCaugGUgCCGgacuggcccgacuucGCCGCGc -3' miRNA: 3'- aCCCGGCCGG-CGga-CAaGGU---------------UGGCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 5264 | 0.66 | 0.310123 |
Target: 5'- gGGGUCGGCaauGCgUcGUUCCAgcgucgauuGCUGCAu -3' miRNA: 3'- aCCCGGCCGg--CGgA-CAAGGU---------UGGCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 11600 | 0.66 | 0.310123 |
Target: 5'- -cGGCUGGCCGCCgggcagcaGUgCCAGCggaaGCAu -3' miRNA: 3'- acCCGGCCGGCGGa-------CAaGGUUGg---CGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 1192 | 0.66 | 0.310123 |
Target: 5'- gGGGUCGGCCgGgUUGUUggaaUAACCGCc -3' miRNA: 3'- aCCCGGCCGG-CgGACAAg---GUUGGCGu -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 24508 | 0.66 | 0.302674 |
Target: 5'- gGGGCUGGCgcccaCGCCgaucacgUCCAgguggaugACCGCGu -3' miRNA: 3'- aCCCGGCCG-----GCGGaca----AGGU--------UGGCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 34208 | 0.66 | 0.302674 |
Target: 5'- aGGGCaCGGCCGCgcacGaaCUGGCCGCc -3' miRNA: 3'- aCCCG-GCCGGCGga--CaaGGUUGGCGu -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 14923 | 0.66 | 0.302674 |
Target: 5'- -uGGCCGGCCuCaaGUgCCGACUGCGc -3' miRNA: 3'- acCCGGCCGGcGgaCAaGGUUGGCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 36074 | 0.66 | 0.295363 |
Target: 5'- gUGGGCCGGuUCGCCac--CCAGaCGCAc -3' miRNA: 3'- -ACCCGGCC-GGCGGacaaGGUUgGCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 31524 | 0.66 | 0.28819 |
Target: 5'- cGGGCaGGUCGCCa-UUCCGguggaggaauacGCCGCGc -3' miRNA: 3'- aCCCGgCCGGCGGacAAGGU------------UGGCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 14136 | 0.66 | 0.281155 |
Target: 5'- -cGGCCaGCgGCUUGccUUCCGGCCGUu -3' miRNA: 3'- acCCGGcCGgCGGAC--AAGGUUGGCGu -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 19495 | 0.67 | 0.260869 |
Target: 5'- gUGGGCaGGCCGCUg---CgAACCGUg -3' miRNA: 3'- -ACCCGgCCGGCGGacaaGgUUGGCGu -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 16937 | 0.67 | 0.260214 |
Target: 5'- aGGGCaCGG-CGCCg--UCCAgcagcguGCCGCGu -3' miRNA: 3'- aCCCG-GCCgGCGGacaAGGU-------UGGCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 38378 | 0.67 | 0.254377 |
Target: 5'- cUGGGCCGcUgGCCUGccgCUcGCCGCGg -3' miRNA: 3'- -ACCCGGCcGgCGGACaa-GGuUGGCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 4258 | 0.67 | 0.254377 |
Target: 5'- cGGuGCCGGCCGUCaGcgCCGgcauggugaugGCCGUg -3' miRNA: 3'- aCC-CGGCCGGCGGaCaaGGU-----------UGGCGu -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 28666 | 0.67 | 0.241791 |
Target: 5'- cGGuGCCGGCgGCCUcg-CCAG-CGCGg -3' miRNA: 3'- aCC-CGGCCGgCGGAcaaGGUUgGCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 8036 | 0.68 | 0.22389 |
Target: 5'- aGGGCCGccguccuuGCCGCCg--UCCAugaCGCGc -3' miRNA: 3'- aCCCGGC--------CGGCGGacaAGGUug-GCGU- -5' |
|||||||
26608 | 5' | -62.1 | NC_005357.1 | + | 16816 | 0.68 | 0.22389 |
Target: 5'- cUGGcGaCCGcGCCGCCgugGUUgCCAcugccuggGCCGCAg -3' miRNA: 3'- -ACC-C-GGC-CGGCGGa--CAA-GGU--------UGGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home