miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26608 5' -62.1 NC_005357.1 + 13465 0.66 0.317711
Target:  5'- cGGGCgCGGUgucgggcaUGaCCUGggcgaugCCGACCGCGc -3'
miRNA:   3'- aCCCG-GCCG--------GC-GGACaa-----GGUUGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 29678 0.66 0.317711
Target:  5'- aGGGCgCGGCCGUgUGUUUgaaAAUCGgAa -3'
miRNA:   3'- aCCCG-GCCGGCGgACAAGg--UUGGCgU- -5'
26608 5' -62.1 NC_005357.1 + 7168 0.66 0.317711
Target:  5'- aGGGCCGGgCGCUUGUcggaUUCGGggGCGa -3'
miRNA:   3'- aCCCGGCCgGCGGACA----AGGUUggCGU- -5'
26608 5' -62.1 NC_005357.1 + 22797 0.66 0.313142
Target:  5'- cGGGCCGGUCaGCaugGUgCCGgacuggcccgacuucGCCGCGc -3'
miRNA:   3'- aCCCGGCCGG-CGga-CAaGGU---------------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 11600 0.66 0.310123
Target:  5'- -cGGCUGGCCGCCgggcagcaGUgCCAGCggaaGCAu -3'
miRNA:   3'- acCCGGCCGGCGGa-------CAaGGUUGg---CGU- -5'
26608 5' -62.1 NC_005357.1 + 1192 0.66 0.310123
Target:  5'- gGGGUCGGCCgGgUUGUUggaaUAACCGCc -3'
miRNA:   3'- aCCCGGCCGG-CgGACAAg---GUUGGCGu -5'
26608 5' -62.1 NC_005357.1 + 5264 0.66 0.310123
Target:  5'- gGGGUCGGCaauGCgUcGUUCCAgcgucgauuGCUGCAu -3'
miRNA:   3'- aCCCGGCCGg--CGgA-CAAGGU---------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 34208 0.66 0.302674
Target:  5'- aGGGCaCGGCCGCgcacGaaCUGGCCGCc -3'
miRNA:   3'- aCCCG-GCCGGCGga--CaaGGUUGGCGu -5'
26608 5' -62.1 NC_005357.1 + 14923 0.66 0.302674
Target:  5'- -uGGCCGGCCuCaaGUgCCGACUGCGc -3'
miRNA:   3'- acCCGGCCGGcGgaCAaGGUUGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 24508 0.66 0.302674
Target:  5'- gGGGCUGGCgcccaCGCCgaucacgUCCAgguggaugACCGCGu -3'
miRNA:   3'- aCCCGGCCG-----GCGGaca----AGGU--------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 36074 0.66 0.295363
Target:  5'- gUGGGCCGGuUCGCCac--CCAGaCGCAc -3'
miRNA:   3'- -ACCCGGCC-GGCGGacaaGGUUgGCGU- -5'
26608 5' -62.1 NC_005357.1 + 31524 0.66 0.28819
Target:  5'- cGGGCaGGUCGCCa-UUCCGguggaggaauacGCCGCGc -3'
miRNA:   3'- aCCCGgCCGGCGGacAAGGU------------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 14136 0.66 0.281155
Target:  5'- -cGGCCaGCgGCUUGccUUCCGGCCGUu -3'
miRNA:   3'- acCCGGcCGgCGGAC--AAGGUUGGCGu -5'
26608 5' -62.1 NC_005357.1 + 19495 0.67 0.260869
Target:  5'- gUGGGCaGGCCGCUg---CgAACCGUg -3'
miRNA:   3'- -ACCCGgCCGGCGGacaaGgUUGGCGu -5'
26608 5' -62.1 NC_005357.1 + 16937 0.67 0.260214
Target:  5'- aGGGCaCGG-CGCCg--UCCAgcagcguGCCGCGu -3'
miRNA:   3'- aCCCG-GCCgGCGGacaAGGU-------UGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 38378 0.67 0.254377
Target:  5'- cUGGGCCGcUgGCCUGccgCUcGCCGCGg -3'
miRNA:   3'- -ACCCGGCcGgCGGACaa-GGuUGGCGU- -5'
26608 5' -62.1 NC_005357.1 + 4258 0.67 0.254377
Target:  5'- cGGuGCCGGCCGUCaGcgCCGgcauggugaugGCCGUg -3'
miRNA:   3'- aCC-CGGCCGGCGGaCaaGGU-----------UGGCGu -5'
26608 5' -62.1 NC_005357.1 + 28666 0.67 0.241791
Target:  5'- cGGuGCCGGCgGCCUcg-CCAG-CGCGg -3'
miRNA:   3'- aCC-CGGCCGgCGGAcaaGGUUgGCGU- -5'
26608 5' -62.1 NC_005357.1 + 8036 0.68 0.22389
Target:  5'- aGGGCCGccguccuuGCCGCCg--UCCAugaCGCGc -3'
miRNA:   3'- aCCCGGC--------CGGCGGacaAGGUug-GCGU- -5'
26608 5' -62.1 NC_005357.1 + 16816 0.68 0.22389
Target:  5'- cUGGcGaCCGcGCCGCCgugGUUgCCAcugccuggGCCGCAg -3'
miRNA:   3'- -ACC-C-GGC-CGGCGGa--CAA-GGU--------UGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.