Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26609 | 5' | -57.5 | NC_005357.1 | + | 10925 | 0.66 | 0.551314 |
Target: 5'- gGCCCAGCAgca-CGCCGGCggCAa-- -3' miRNA: 3'- -CGGGUCGUagggGCGGCUGuaGUagc -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 11418 | 0.66 | 0.551314 |
Target: 5'- cGgCCGGCAagCCCGUgGACAg-GUCGc -3' miRNA: 3'- -CgGGUCGUagGGGCGgCUGUagUAGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 37839 | 0.66 | 0.540592 |
Target: 5'- gGCCgAGCAguUCCUCGCCuGGCG-CAcCGa -3' miRNA: 3'- -CGGgUCGU--AGGGGCGG-CUGUaGUaGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 38093 | 0.66 | 0.540592 |
Target: 5'- cGgCCAGCAUCaagGCUGGCAcCAUCGu -3' miRNA: 3'- -CgGGUCGUAGgggCGGCUGUaGUAGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 20598 | 0.66 | 0.52994 |
Target: 5'- cCUCGGUAUCCuUCGCCaGGCggCGUCGc -3' miRNA: 3'- cGGGUCGUAGG-GGCGG-CUGuaGUAGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 25649 | 0.66 | 0.52994 |
Target: 5'- cCUCGGCGagUUCUGCCGGCGUCAUg- -3' miRNA: 3'- cGGGUCGUa-GGGGCGGCUGUAGUAgc -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 33189 | 0.66 | 0.52994 |
Target: 5'- cGCCCucGGCAcggCCaCCGCUGGCuAUCG-CGg -3' miRNA: 3'- -CGGG--UCGUa--GG-GGCGGCUG-UAGUaGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 28863 | 0.66 | 0.508877 |
Target: 5'- uCCCAGCG-CCgCGCC-ACGUCcUCGc -3' miRNA: 3'- cGGGUCGUaGGgGCGGcUGUAGuAGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 18866 | 0.66 | 0.508877 |
Target: 5'- cGCCC-GCA--CCUGCCGGCGaUGUCGg -3' miRNA: 3'- -CGGGuCGUagGGGCGGCUGUaGUAGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 4859 | 0.66 | 0.498478 |
Target: 5'- cGgCCAGCuuccaAUCCUCGCCGGCGagccacgcaaUCAUgCGu -3' miRNA: 3'- -CgGGUCG-----UAGGGGCGGCUGU----------AGUA-GC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 8180 | 0.66 | 0.498478 |
Target: 5'- cGCCCGGa--UgCUGCCGGCGauuUCAUCGc -3' miRNA: 3'- -CGGGUCguaGgGGCGGCUGU---AGUAGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 7114 | 0.66 | 0.498478 |
Target: 5'- uCCaCGGUuUCCCCGCUcACGUCcgCGa -3' miRNA: 3'- cGG-GUCGuAGGGGCGGcUGUAGuaGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 25339 | 0.66 | 0.498478 |
Target: 5'- gGCCCGGCcgagaaCCgCGCCGGCuUCGccuUCGu -3' miRNA: 3'- -CGGGUCGua----GGgGCGGCUGuAGU---AGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 7502 | 0.66 | 0.498478 |
Target: 5'- cGCCCAGCAggUUgCCGaggaUGGCGUUGUCu -3' miRNA: 3'- -CGGGUCGU--AGgGGCg---GCUGUAGUAGc -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 19037 | 0.67 | 0.488175 |
Target: 5'- aGCCCugguAGCGg--CCGCCGGCggCGUCGn -3' miRNA: 3'- -CGGG----UCGUaggGGCGGCUGuaGUAGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 6136 | 0.67 | 0.48715 |
Target: 5'- uGCCCuuccaucAGCA-CCCacuCGCCGcCGUCAUCu -3' miRNA: 3'- -CGGG-------UCGUaGGG---GCGGCuGUAGUAGc -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 24392 | 0.67 | 0.477973 |
Target: 5'- gGCCCccaAGCAg-CCCGCCGACAa----- -3' miRNA: 3'- -CGGG---UCGUagGGGCGGCUGUaguagc -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 26826 | 0.67 | 0.477973 |
Target: 5'- -gUCAGCAUCCUgGCCGAUggCG-CGg -3' miRNA: 3'- cgGGUCGUAGGGgCGGCUGuaGUaGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 19966 | 0.67 | 0.476958 |
Target: 5'- aCCCAGguUUCgggcaggCCGCCGAUGUCcgCGu -3' miRNA: 3'- cGGGUCguAGG-------GGCGGCUGUAGuaGC- -5' |
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26609 | 5' | -57.5 | NC_005357.1 | + | 26250 | 0.67 | 0.467877 |
Target: 5'- cGCCgaaGGCAcgggCaCCCGCCGGCcUgGUCGg -3' miRNA: 3'- -CGGg--UCGUa---G-GGGCGGCUGuAgUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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