miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26609 5' -57.5 NC_005357.1 + 10925 0.66 0.551314
Target:  5'- gGCCCAGCAgca-CGCCGGCggCAa-- -3'
miRNA:   3'- -CGGGUCGUagggGCGGCUGuaGUagc -5'
26609 5' -57.5 NC_005357.1 + 11418 0.66 0.551314
Target:  5'- cGgCCGGCAagCCCGUgGACAg-GUCGc -3'
miRNA:   3'- -CgGGUCGUagGGGCGgCUGUagUAGC- -5'
26609 5' -57.5 NC_005357.1 + 37839 0.66 0.540592
Target:  5'- gGCCgAGCAguUCCUCGCCuGGCG-CAcCGa -3'
miRNA:   3'- -CGGgUCGU--AGGGGCGG-CUGUaGUaGC- -5'
26609 5' -57.5 NC_005357.1 + 38093 0.66 0.540592
Target:  5'- cGgCCAGCAUCaagGCUGGCAcCAUCGu -3'
miRNA:   3'- -CgGGUCGUAGgggCGGCUGUaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 20598 0.66 0.52994
Target:  5'- cCUCGGUAUCCuUCGCCaGGCggCGUCGc -3'
miRNA:   3'- cGGGUCGUAGG-GGCGG-CUGuaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 25649 0.66 0.52994
Target:  5'- cCUCGGCGagUUCUGCCGGCGUCAUg- -3'
miRNA:   3'- cGGGUCGUa-GGGGCGGCUGUAGUAgc -5'
26609 5' -57.5 NC_005357.1 + 33189 0.66 0.52994
Target:  5'- cGCCCucGGCAcggCCaCCGCUGGCuAUCG-CGg -3'
miRNA:   3'- -CGGG--UCGUa--GG-GGCGGCUG-UAGUaGC- -5'
26609 5' -57.5 NC_005357.1 + 28863 0.66 0.508877
Target:  5'- uCCCAGCG-CCgCGCC-ACGUCcUCGc -3'
miRNA:   3'- cGGGUCGUaGGgGCGGcUGUAGuAGC- -5'
26609 5' -57.5 NC_005357.1 + 18866 0.66 0.508877
Target:  5'- cGCCC-GCA--CCUGCCGGCGaUGUCGg -3'
miRNA:   3'- -CGGGuCGUagGGGCGGCUGUaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 4859 0.66 0.498478
Target:  5'- cGgCCAGCuuccaAUCCUCGCCGGCGagccacgcaaUCAUgCGu -3'
miRNA:   3'- -CgGGUCG-----UAGGGGCGGCUGU----------AGUA-GC- -5'
26609 5' -57.5 NC_005357.1 + 8180 0.66 0.498478
Target:  5'- cGCCCGGa--UgCUGCCGGCGauuUCAUCGc -3'
miRNA:   3'- -CGGGUCguaGgGGCGGCUGU---AGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 7114 0.66 0.498478
Target:  5'- uCCaCGGUuUCCCCGCUcACGUCcgCGa -3'
miRNA:   3'- cGG-GUCGuAGGGGCGGcUGUAGuaGC- -5'
26609 5' -57.5 NC_005357.1 + 25339 0.66 0.498478
Target:  5'- gGCCCGGCcgagaaCCgCGCCGGCuUCGccuUCGu -3'
miRNA:   3'- -CGGGUCGua----GGgGCGGCUGuAGU---AGC- -5'
26609 5' -57.5 NC_005357.1 + 7502 0.66 0.498478
Target:  5'- cGCCCAGCAggUUgCCGaggaUGGCGUUGUCu -3'
miRNA:   3'- -CGGGUCGU--AGgGGCg---GCUGUAGUAGc -5'
26609 5' -57.5 NC_005357.1 + 19037 0.67 0.488175
Target:  5'- aGCCCugguAGCGg--CCGCCGGCggCGUCGn -3'
miRNA:   3'- -CGGG----UCGUaggGGCGGCUGuaGUAGC- -5'
26609 5' -57.5 NC_005357.1 + 6136 0.67 0.48715
Target:  5'- uGCCCuuccaucAGCA-CCCacuCGCCGcCGUCAUCu -3'
miRNA:   3'- -CGGG-------UCGUaGGG---GCGGCuGUAGUAGc -5'
26609 5' -57.5 NC_005357.1 + 24392 0.67 0.477973
Target:  5'- gGCCCccaAGCAg-CCCGCCGACAa----- -3'
miRNA:   3'- -CGGG---UCGUagGGGCGGCUGUaguagc -5'
26609 5' -57.5 NC_005357.1 + 26826 0.67 0.477973
Target:  5'- -gUCAGCAUCCUgGCCGAUggCG-CGg -3'
miRNA:   3'- cgGGUCGUAGGGgCGGCUGuaGUaGC- -5'
26609 5' -57.5 NC_005357.1 + 19966 0.67 0.476958
Target:  5'- aCCCAGguUUCgggcaggCCGCCGAUGUCcgCGu -3'
miRNA:   3'- cGGGUCguAGG-------GGCGGCUGUAGuaGC- -5'
26609 5' -57.5 NC_005357.1 + 26250 0.67 0.467877
Target:  5'- cGCCgaaGGCAcgggCaCCCGCCGGCcUgGUCGg -3'
miRNA:   3'- -CGGg--UCGUa---G-GGGCGGCUGuAgUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.