miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 3' -56.3 NC_005357.1 + 13613 0.66 0.594618
Target:  5'- aACCcgACGACgGCgCGCugGCugcUCAAgaucGGCa -3'
miRNA:   3'- -UGGa-UGCUGaCG-GCGugCG---AGUU----CCG- -5'
26611 3' -56.3 NC_005357.1 + 36083 0.66 0.594618
Target:  5'- gGCCUuCGg--GCCGgGCGCUUuggcuGGGGCg -3'
miRNA:   3'- -UGGAuGCugaCGGCgUGCGAG-----UUCCG- -5'
26611 3' -56.3 NC_005357.1 + 29043 0.66 0.594618
Target:  5'- cGCCUACaa---CCGCGCGCU--GGGCa -3'
miRNA:   3'- -UGGAUGcugacGGCGUGCGAguUCCG- -5'
26611 3' -56.3 NC_005357.1 + 31609 0.66 0.591281
Target:  5'- cCCUACcuGCUGCUuUACGCagcguggcagggccUCAAGGCa -3'
miRNA:   3'- uGGAUGc-UGACGGcGUGCG--------------AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 41923 0.66 0.583509
Target:  5'- cGCCUGCaaGCcGCCGCGgcgcaguaUGCUgcCGAGGCa -3'
miRNA:   3'- -UGGAUGc-UGaCGGCGU--------GCGA--GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 38226 0.66 0.583509
Target:  5'- aGCC-GCGACgUGCuCGCGgccaacaugccCGCcaUCGAGGCg -3'
miRNA:   3'- -UGGaUGCUG-ACG-GCGU-----------GCG--AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 27423 0.66 0.583509
Target:  5'- cGCCUGgcgcaccgcgccCGGCgGCCGCAgGC-CcuGGCg -3'
miRNA:   3'- -UGGAU------------GCUGaCGGCGUgCGaGuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 14328 0.66 0.583509
Target:  5'- cGCCUugGcugaACUGCCgggccuGCugGUUCGcGGUg -3'
miRNA:   3'- -UGGAugC----UGACGG------CGugCGAGUuCCG- -5'
26611 3' -56.3 NC_005357.1 + 20305 0.66 0.572441
Target:  5'- aGCCUGuuCGACcGCgGCGCGCUgGaacaguGGGUu -3'
miRNA:   3'- -UGGAU--GCUGaCGgCGUGCGAgU------UCCG- -5'
26611 3' -56.3 NC_005357.1 + 8677 0.66 0.572441
Target:  5'- ---aGCGGCUGCUGCGcCGCcCAGGuGUg -3'
miRNA:   3'- uggaUGCUGACGGCGU-GCGaGUUC-CG- -5'
26611 3' -56.3 NC_005357.1 + 8903 0.66 0.561425
Target:  5'- ---aAUGGCgcuaucgGCgGCGCGCUCGAuGGCu -3'
miRNA:   3'- uggaUGCUGa------CGgCGUGCGAGUU-CCG- -5'
26611 3' -56.3 NC_005357.1 + 165 0.66 0.550466
Target:  5'- uGCCcaa-GCUGCCGCGCGCagAAugccGGCg -3'
miRNA:   3'- -UGGaugcUGACGGCGUGCGagUU----CCG- -5'
26611 3' -56.3 NC_005357.1 + 4549 0.66 0.550466
Target:  5'- gUCUugGGCUugagGCCGaaguCGC-CGAGGCg -3'
miRNA:   3'- uGGAugCUGA----CGGCgu--GCGaGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 24422 0.66 0.549374
Target:  5'- aGCCggccCGAUuugucggUGCCGCGCGCggcCucGGCg -3'
miRNA:   3'- -UGGau--GCUG-------ACGGCGUGCGa--GuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 7514 0.66 0.539575
Target:  5'- uGCCgaggAUGGCguugucuaCCGUGCGCUCGGcGGCg -3'
miRNA:   3'- -UGGa---UGCUGac------GGCGUGCGAGUU-CCG- -5'
26611 3' -56.3 NC_005357.1 + 444 0.66 0.539575
Target:  5'- uCgUugGGCUGCUGCGCggccaGCUUGcGGGCg -3'
miRNA:   3'- uGgAugCUGACGGCGUG-----CGAGU-UCCG- -5'
26611 3' -56.3 NC_005357.1 + 16732 0.66 0.539575
Target:  5'- cCCUuguuguuCGACgugGCgGuCACGCUCGuGGGCg -3'
miRNA:   3'- uGGAu------GCUGa--CGgC-GUGCGAGU-UCCG- -5'
26611 3' -56.3 NC_005357.1 + 11492 0.66 0.536321
Target:  5'- cGCCUGCGACa-CCGCaaagggcagcgccuGCGCUggcgUGAGGCc -3'
miRNA:   3'- -UGGAUGCUGacGGCG--------------UGCGA----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 34205 0.67 0.528757
Target:  5'- uGCUgACGGCcGCCGaccaGCGCgacuaCGAGGCc -3'
miRNA:   3'- -UGGaUGCUGaCGGCg---UGCGa----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 33896 0.67 0.522305
Target:  5'- gGCCUGCGAUaccugggcaaguucGCCG-GCGacaUCAGGGCa -3'
miRNA:   3'- -UGGAUGCUGa-------------CGGCgUGCg--AGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.